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  4. 誌上発表（国際誌・査読有）2024年

研究成果　Research Result

誌上発表（国際誌・査読有）2024年

バイオアナリティカル研究グループ
Bioanalytical Research Group

  • Kato, H., Miura, D., Kato, M., Shimizu, M.: Metabolic mechanism of lignin-derived aromatics in white-rot fungi. Appl. Microbiol. Biotechnol., 108(1), 532 (2024).
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  • Tahara, K., Nakamura, A., Wang, X., Mitamura, K., Ichihashi, Y., Kano, K., Mishiro-Sato, E., Aoki, K., Urano, Y., Komatsu, T., Tsukiji, S.: γ-Secretase Cleaves Bifunctional Fatty Acid-Conjugated Small Molecules with Amide Bonds in Mammalian Cells. ACS Chem. Biol., 19(12), 2438-2450 (2024).
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  • Mori, K., Watanabe, M., Nanri, K., Matsukura, S., Ota, Y., Homma, N., Noda, N.: Clear zone formation in microdroplets for high-throughput screening for lactic acid bacteria. Front. Microbiol., 15 (2024).
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  • Jiang, Y-N., Tamiya-Ishitsuka, H., Aoi, R., Okabe, T., Yokota, A., Noda, N.: MazEF Homologs in Symbiobacterium thermophilum Exhibit Cross-Neutralization with Non-Cognate MazEFs. Toxins, 16(2), 81 (2024).
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  • Okabe, T., Aoi, R., Yokota, A., Tamiya-Ishitsuka, H., Jiang, Y., Sasaki, A., Tsuneda, S., Noda, N.: Arg-73 of the RNA endonuclease MazF in Salmonella enterica subsp. arizonae contributes to guanine and uracil recognition in the cleavage sequence. J. Biol. Chem., 300(2), 105636 (2024).
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  • Miura, D., Tsurigami, R., Kato, H., Wariishi, H., Shimizu, M.: Pathway crosstalk between the central metabolic and heme biosynthetic pathways in Phanerochaete chrysosporium. Appl. Microbiol. Biotechnol., 108(1), 37 (2024).
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バイオシステム多様性研究グループ
Biosystem Diversity Research Group

  • Mizutani, M., Koga, R., Fukatsu, T., Kakizawa, S.: Complete genome of the mutualistic symbiont Buchnera aphidicola AIST from a Japanese strain of the pea aphid Acyrthosiphon pisum. Microbiol. Resour. Ann., 14(2), e00973-24 (2024).
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  • Noda, T., Mizutani, M., Harumoto, T., Katsuno, T., Koga, R., Fukatsu, T.: Frequent and asymmetric cell division in endosymbiotic bacteria of cockroaches. Appl. Environ. Microbiol., 90(10), e0146624 (2024).
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  • Sugiyama, R., Moriyama, M., Koga, R., Fukats, T.: Host range of naturally and artificially evolved symbiotic bacteria for a specific host insect. mBio, 15(9) (2024).
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  • Aoki, S., Kurosu, U., Uematsu, K., Fukatsu, T., Ogawa, H., Tokuda, M., Kutsukake, M.: Galls of the Aphid Tuberaphis coreana (Hemiptera) Found on Styrax japonicus in Japan. JAPANESE JOURNAL OF SYSTEMATIC ENTOMOLOGY, 30(1), 89-98 (2024).
  • Keetapithchayakul, T.S., Futahashi, R., Danaisawadi, O., Ignatius, K.J., Wongkamhaeng, K.: Description of the Larva of Argiocnemis rubescens rubeola Selys, 1877 (Odonata, Coenagrionidae, Agriocnemidinae) from Thailand with Systematic Notes on the Subfamily Agriocnemidinae. TROPICAL NATURAL HISTORY, 24, 48-89 (2024).
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  • Mizutani, M., Omori, S., Yamane, N., Suzuki, Y., Glass, J.I., Chuang, R., Fukatsu, T., Kakizawa, S.: Cloning and sequencing analysis of whole Spiroplasma genome in yeast. Front. Microbiol., 15, 1411609 (2024).
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  • Cai, W., Moriyama, M., Fukatsu, T.: High temperature treatment optimized for symbiont suppression in an obligatory gut bacterial symbiosis in the stinkbug Plautia stali (Hemiptera: Pentatomidae). Appl. Entomol. Zoolog., 59, 261-266 (2024).
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  • Oguchi, K., Harumoto, T., Katsuno, T., Matsuura, Y., Chiyoda, S., Fukatsu, T.: Intracellularity, extracellularity, and squeezing in the symbiotic organ underpin nurturing and functioning of bacterial symbiont in leaf beetles. 27(5), 109731 (2024).
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  • García-Lozano, M., Henzler, C., Porras, M.A.G., Pons, I., Berasategui, A., Lanz, C., Budde, H., Oguchi, K., Matsuura, Y., Pauchet, Y., Goffredi, S., Fukatsu, T., Windsor, D., Salem, H.: Paleocene origin of a streamlined digestive symbiosis in leaf beetles, Curr. Biol., 34(8), 1621-1634 (2024).
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  • Koga,R., Moriyama, M., Nozaki, T., Fukatsu, T.: Genome analysis of " Candidatus Aschnera chinzeii," the bacterial endosymbiont of the blood-sucking bat fly Penicillidia jenynsii (Insecta: Diptera: Nycteribiidae). Front. Microbiol., 14, 1336919 (2024).
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バイオ構造活性相関研究グループ
Bio-Structure-Activity Relationship Research Group

  • Yanagawa, K., Kuma, A., Hamasaki, M., Kita, S., Yamamuro, T., Nishino, K., Nakamura, S., Omori, H., Kaminishi, T., Oikawa, S., Kato, Y., Edahiro, R., Kawagoe, R., Taniguchi, T., Tanaka, Y., Shima, T., Tabata, K., Iwatani, M., Bekku, N., Hanayama, R., Okada, Y., Akimoto, T., Kosako, H., Takahashi, A., Shimomura, I., Sakata, Y., Yoshimori, T.: The Rubicon–WIPI axis regulates exosome biogenesis during ageing. Nat. Cell Biol., 26, 1558-1570 (2024).
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  • Furuhata, Y., Kimura, M., Sakai, A., Murakami, T., Egi, E., Sakuma, T., Yamamoto, T., Yoshizumi, T., Kato, Y.: Direct protein delivery into intact Arabidopsis cells for genome engineering. Sci Rep, 14(1), 22568 (2024).
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  • Yamasaki, K., Tsuzuki, S., Tateno, H.: Stabilization of the Protein Structure by the Many-Body Cooperative Effect in the NH/π Hydrogen-bonding Tryptophan Triad. J. Phys. Chem. B, 128(30), 7401-7406 (2024).
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  • Kataoka, S., Kawamoto, S., Kitagawa, S., Kugimiya, W., Tsumura, K., Akutsu, Y., Kubota, T., Ishikawa, K.: Structural and functional insights into the enzymatic activities of lipases from Burkholderia stagnalis and Burkholderia plantarii. FEBS Lett., 598(11), 1411-1421 (2024).
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バイオシステム応用研究グループ
Biosystems Engineering Research Group

  • Suzuki, N., Oota-Ishigaki, A., Kaizuka, T., Itoh, M., Yamazaki, M., Natsume, R., Abe, M., Sakimura, K., Mishina, M., Hayashi, T.: Limb-Clasping Response in NMDA Receptor Palmitoylation-Deficient Mice. Mol. Neurobiol., 61(11), 9125-9135 (2024).
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バイオ分子計測研究グループ
Biomolecular Sensing Research Group

  • Shigemori, H., Fujita, S., Tamiya, E., Nagai, H.: Miniaturization of CRISPR/Cas12-Based DNA Sensor Array by Non-Contact Printing. Micromachines, 15(1) (2024).
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バイオ分子探索研究グループ
Lead Biomolecule Research Group

  • Watanabe, M., Nakamichi, Y., Mine, S.: Elucidation of d-allulose recognition mechanism in ketose 3-epimerase. J. Biosci. Bioeng., 138(6), 488-494 (2024).
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  • Goda, M., Shiribak, M., Ikeda, Z., Okada, N., Tani, T., Goshima, G, Oldenbourg, R., Kimura, A.: Live-cell imaging under centrifugation characterized the cellular force for nuclear centration in the Caenorhabditis elegans embryo. Proc. Natl. Acad. Sci. USA., 121(43), e2402759121 (2024).
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  • Kagawa, Y., Oohora, K., Himiyama, T., Suzuki, A., Hayashi, T.: Redox Engineering of Myoglobin by Cofactor Substitution to Enhance Cyclopropanation Reactivity. Angew. Chem.-Int. Edit., 63(36), e202403485 (2024).
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  • Iida, S., Ide, S., Tamura, S., Tani, T., Goto, T., Shribak, M., Maeshima, K.: Orientation-Independent-DIC imaging reveals that a transient rise in depletion force contributes to mitotic chromosome condensation. Proc. Natl. Acad. Sci. USA., 121(36), e2403153121 (2024).
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  • Ihara, M., Tsuchida, N., Sumida, M., Himiyama, T., Kitayama, T., Shirasaka, N., Fukuta, Y.: Crystal Structure of the Native Chromoprotein from Pleurotus salmoneostramineus Provides Insights into the Pigmentation Mechanism. J. Agric. Food Chem., 72(31), 17626-17632 (2024).
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  • Nakayama, Y., Matsu-ura, T., Tanaka, R., Shiono, T., Hino, S., Kawasaki, N., Yamano, N., Nakayama, A., Tezuka, R., Tanaka, K.: Biodegradable thermoplastic elastomers synthesized from C7–C10 aliphatic dicarboxylic acids, 2-methyl-1,3-propanediol, and L-lactide. Polym. Degrad. Stabil., 229, 110978 (2024).
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バイオ分子評価研究グループ
Biomolecular Evaluation Research Group

  • Mukae, T., Yoshii, K., Oishi, I.: Application of Recombinant Monoclonal Antibodies from Transgenic Chicken Bioreactors in Enzyme-Linked Immunosorbent Assay. Biol. Pharm. Bull., 47(9), 1532-1541 (2024).
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  • Hino, S., Masui, A., Okamura, H., Kawasaki, N., Yamano, N., Nakayama, A.: Porphyrin as Photosensitizers for Controlling Marine Biodegradation of Polymer Composites. Biomacromolecules, 25(10), 6395-6402 (2024).
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  • Fukuda, N., Takeuchi, M.: Removal of undesirable genes using yeast backcrossing. J. Biosci. Bioeng. (2024).
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  • Asama, R., Tominaga, M., Ito, S., Ito, Y., Takemura, K., Sakuraba, S., Katsurada, K., Fukuda, N., Kondo, A., Ishii, J.: Screening of protein-based inhibitors for the intracellular domain of epidermal growth factor receptor by directed evolution using the yeast Gγ recruitment system. J. Biosci. Bioeng. (2024).
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  • Takeuchi, M., Fujiwara-Nagata, E., Kuroda, K., Sakata, K., Narihiro, T., Kikuchi, J.: Fecal metagenomic and metabolomic analyses reveal non-invasive biomarkers of Flavobacterium psychrophilum infection in ayu (Plecoglossus altivelis). mSphere, 9(7) (2024).
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  • Yakaryo, H., Nakayama, A., Kawasaki, N., Yamano, N., Ida, S., Tokiwa, Y.: Synthesis and Biodegradation of Atactic Polymer Based on 3-Hydroxybutanoic Acid. Chem. Lett., 53(3) (2024).
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  • Omura, T., Isobe, N., Miura, T., Ishii, S., Mori, M., Ishitani, Y., Kimura, S., Hidaka, K., Komiyama, K., Suzuki, M., Kasuya, K., Nomaki, H., Nakajima, R., Tsuchiya, M., Kawagucci, S., Mori, H., Nakayama, A., Kunioka, M., Kamino, K., Iwata, T.: Microbial decomposition of biodegradable plastics on the deep-sea floor. Nat. Commun., 15, 568-584 (2024).
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バイオ分子モダリティ研究グループ
Biomolecular Modality Research Group

  • Okuda, T.: Characterization of antibodies induced by immunization of mice with isoglobotrihexosylceramide (iGb3). Biochem. Biophys. Rep., 40, 101855 (2024).
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バイオ分子機能制御研究グループ
Operating Biomolecule Research Group

  • Toita, R., Shimizu, Y., Shimizu, E., Deguchi, T., Tsuchiya, A., Kang, J-H., Kitamura, M., Kato, A., Yamada, H., Yamaguchi, S., Kasahara, S.: Collagen patches releasing phosphatidylserine liposomes guide M1-to-M2 macrophage polarization and accelerate simultaneous bone and muscle healing. Acta Biomater. (2024).
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  • Nguyen, T., Itayama, T., Iwami, N., Shimizu, K., Dao, T., Pham, T.L., Tra, V.Q., Maseda, H.: Toxicity of ciprofloxacin and ofloxacin to Moina macrocopa and investigation of p-value adjustments for (eco)toxicological studies. Drug Chem. Toxicol., 47(5), 662-673 (2024).
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  • Hitsuda, Y., Koto, Y., Kawahara, H., Kurata, K., Yoshikiyo, K., Nishimura, K., Hashiguchi, A., Maseda, H., Okano, K., Sugiura, N., Shimizu, K., Shimizu, H.: Increased Prorenin Expression in the Kidneys May Be Involved in the Abnormal Renal Function Caused by Prolonged Environmental Exposure to Microcystin-LR.. Toxics, 12(8), 547 (2024).
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  • You, J., Andriamanohiarisaamanana, F.J., Farghali, M., Yoshida, G., Shimizu, K., Maseda, H., Umetsu, K., Ihara, I.: Unveiling antibiotic resistance dynamics in single and two-stage anaerobic digestion of dairy cow manure: Implications for environmental health. Process Saf. Environ. Protect., 190, 522-534 (2024).
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  • Toita, R., Kitamura, M., Tsuchiya, A., Kang, J-H., Kasahara, S.: Releasable, Immune-Instructive, Bioinspired Multilayer Coating Resists Implant-Induced Fibrosis while Accelerating Tissue Repair. Adv. Healthc. Mater., 2302611 (2024).
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  • Kang, J-H., Kawano, T., Murata, M., Toita, R.: Vascular calcification and cellular signaling pathways as potential therapeutic targets. Life Sci., 336, 122309 (2024).
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  • Tsuno, S., Harada, K., Horikoshi, M., Mita, M., Kitaguchi, T., Yokota Hirai, M., Matsumoto, M., Tsuboi, T.: Mitochondrial ATP concentration decreases immediately after glucose administration to glucose-deprived hepatocytes. FEBS Open Bio, 14(1), 79-95 (2024).
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部門長・副部門長・総括研究員・招聘研究員・部門付
Director, Deputy Director, Principal Research Manager

  • Matsuda, T., Akazawa-Ogawa, Y., Komaba, L-K., Kiyose, N., Miyazaki, N., Mizuguchi, Y., Fukuta, T., Ito, Y., Hagihara, Y.: Prediction of antigen-responding VHH antibodies by tracking the evolution of antibody along the time course of immunization. Front. Immunol., 14 (2024).
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  • Sakata, S., Li, J., Yasuno, Y., Shinada, T., Shin-Ya, K., Katsuyama, Y., Ohnishi, Y.: Identification of the Cirratiomycin Biosynthesis Gene Cluster in Streptomyces Cirratus: Elucidation of the Biosynthetic Pathways for 2,3-Diaminobutyric Acid and Hydroxymethylserine. Chemistry, 30(28), e202400271 (2024).
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  • Kudo, K., Nishimura, T., Izumikawa, M., Kozone, K., Hashimoto, J., Fujie, M., Suenaga, H., Ikeda, H., Satoh, N., Shin-ya, K.: Capability of a large bacterial artificial chromosome clone harboring multiple biosynthetic gene clusters for the production of diverse compounds. J. Antibiot., 77, 288-298 (2024).
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  • Nishimura, T., Kudo, K., Izumikawa, M., Kozone, K., Hashimoto, J., Kagaya, N., Suenaga, H., Takeuchi, K., Shin-ya, K.: Isolation and Structure Elucidation of JBIR-157, a Skeletally Novel Aromatic Polyketide Produced by the Heterologous Expression of a Cryptic Gene Cluster. Chem. Pharm. Bull., 72(5), 475-479 (2024).
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  • Zheng, Y., Morita, N., Takagi, H., Shiozaki-Sato, Y., Ishikawa, J., Shin-ya, K., Takahashi, S.: Alanyl-tRNA Synthetase-like Enzyme-Catalyzed Aminoacylation in Nucleoside Sulfamate Ascamycin Biosynthesis. ACS Catal., 14(8), 3533-3542 (2024).
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  • Goto, Y., Miyafusa, T., Honda, S.: Designing monomeric IFNγ: The significance of domain-swapped dimer structure in IFNγ immune responses. J. Biol. Chem., 300(7), 107464 (2024).
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  • Watanabe, H., Hayashida, N.,, Sato, M., Honda, S.: Biosensing-based quality control monitoring of the higher-order structures of therapeutic antibody domains. Anal. Chim. Acta, 1303, 342439 (2024).
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  • Chuma, S., Kiyosue, K., Akiyama, T., Kinoshita, M., Shimazaki, Y., Uchiyama, S., Sotoma, S., Okabe, K., Harada, Y.: Implication of thermal signaling in neuronal differentiation revealed by manipulation and measurement of intracellular temperature. Nat. Commun., 15(3473) (2024).
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