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  4. 誌上発表(国際誌・査読有)2023年

研究成果 Research Result



Molecular Neurobiology Research Group

  • Kuramochi, M., Sugawara, I., Shinkai, Y., Mio, K., Sasaki, Y.C.: Time-Resolved X-ray Observation of Intracellular Crystallized Protein in Living Animal. Int. J. Mol. Sci., 24(23), 16914 (2023).
  • Mizuike, A., Sakai, S., Katoh, K., Yamaji, T., Hanada, K.: The C10orf76-PI4KB axis orchestrates CERT-mediated ceramide trafficking to the distal Golgi. J. Cell Biol., 222(7), e202111069 (2023).
  • Otaki, T., Katoh, K.: Apodized phase contrast microscopy for bright high contrast reveals motion of organelles. Opt. Rev., 30, 268-274 (2023).
  • Itai, T., Sugie, A., Nitta, Y., Maki, R., Suzuki, T., Shinkai, Y., Watanabe, Y., Nakano, Y., Ichikawa, K., Okamoto, N., Utsuno, Y., Koshimizu, E., Fujita, A., Hamanaka, K., Uchiyama, Y., Tsuchida, N., Miyake, N., Misawa, K., Mizuguchi, T., Miyatake, S., Matsumoto, N.: A novel NONO variant that causes developmental delay and cardiac phenotypes. Sci. Rep., 13(975) (2023).

Molecular Neurophysiology Research Group

  • Shirasawa, T., Hirano, K., Namihira, M., Cobos, L.C., Tomoki, T.: Bangle Rhizome Extract Promotes Hippocampal Neurogenesis Associated with Improved Cognitive Functions: A Case Study. Biomedical Journal of Scientific & Technological Research (2023).
  • Murotomi, K., Kagiwada, H., Hirano, K., Yamamoto, S., Numata, N., Matsumoto, Y., Kaneko, H., Namihira, M.: Cyclo-glycylproline attenuates hydrogen peroxide-induced cellular damage mediated by the MDM2-p53 pathway in human neural stem cells. J. Cell. Physiol. (2023).

Functional Biomolecular Research Group

  • Kang, J-H., Asai, D., Toita, R.: Bisphenol A (BPA) and Cardiovascular or Cardiometabolic Diseases. J. Xenobiotics, 13(4), 775-810 (2023).
  • Takata, H., Masuda, Y., Ohmido, N.: CRISPR imaging reveals chromatin fluctuation at the centromere region related to cellular senescence. Sci Rep, 13, 14609 (2023).


Bioanalytical Research Group

  • Hoshino, M., Ota, Y., Suyama, T., Morishita, Y., Tsuneda, S., Noda, N.: Water-in-oil droplet-mediated method for detecting and isolating infectious bacteriophage particles via fluorescent staining. Front. Microbiol., 14, 1282372 (2023).
  • Fukuoka, H., Tourlousse, D.M., Ohashi, A., Suzuki, S., Nakagawa, K., Ozawa, M., Ishibe, A., Endo, I., Sekiguchi, Y.: Elucidating colorectal cancer-associated bacteria through profiling of minimally perturbed tissue-associated microbiota. Front. Cell. Infect. Microbiol., 13, 1216024 (2023).
  • Koike, K., Tourlousse, D.M., Hamajima, M., Sekiguchi, Y.: Complete Genome Sequence of Coprobacter fastidiosus JCM 33896T. Microbiol. Resour. Ann., 12(7), e0032623 (2023).
  • Koike, K., Tourlousse, D.M., Hamajima, M., Sekiguchi, Y.: Complete Genome Sequence of Anaerostipes hadrus JCM 17467T. Microbiol. Resour. Ann., 12(7), e0032423 (2023).
  • Suyama, T., Kanno, N., Matsukura, S., Chihara, K., Noda, N., Hanada, S.: Transcriptome and Deletion Mutant Analyses Revealed that an RpoH Family Sigma Factor Is Essential for Photosystem Production in Roseateles depolymerans under Carbon Starvation. Microbes Environ., 38(1), ME22072 (2023).
  • Uchida, N., Ryu, Y., Takagi, Y., Yoshizawa, K., Suzuki, K., Anraku, Y., Ajioka, I., Shimokawa, N., Takagi, M., Hoshino, N., Akutagawa, T., Matsubara, T., Sato, T., Higuchi, Y., Ito, H., Morita, M., Muraoka, T.: Endocytosis-Like Vesicle Fission Mediated by a Membrane-Expanding Molecular Machine Enables Virus Encapsulation for In Vivo Delivery. J. Am. Chem. Soc., 145(11), 6210-6220 (2023).

Medical and Biological Engineering Research Group

  • Yamazoe, H.: Multifunctional Micromachines Constructed by Combining Multiple Protein-Based Components with Different Functions. ACS Appl. Mater. Interfaces, 15(51), 59145-59154 (2023).
  • Soeta, Y., Ariki, A.: Subjective salience and the effects of familiarity with birdsongs and insect songs in noise environments. Appl. Acoust., 213, 109666 (2023).
  • Nagatani, Y., Takazawa, K., Maeda, K., Kambara, A., Soeta, Y., Ogawa, K.: Gamma-modulated human speech-originated sound evokes and entrains gamma wave in human brain. Appl. Acoust., 211, 109518 (2023).
  • Frescura, A., Lee, P., Jeong, J., Soeta, Y.: EEG alpha wave responses to sounds from neighbours in high-rise wood residential buildings. Build. Environ., 242, 110560 (2023).
  • Soeta, Y., Onogawa, E.: Physiological evaluations of low-level impulsive sounds generated by an air conditioner. Front. Psychol., 14, 1128752 (2023).
  • Horio, Y., Isegawa, Y., Shichiri, M.: Daidzein phosphorylates and activates 5-lipoxygenase via the MEK/ERK pathway: a mechanism for inducing the production of 5-lipoxygenase metabolite that inhibit influenza virus intracellular replication. J. Nutr. Biochem., 114, 109276 (2023).
  • Yu, Y., Zhang, G., Li, X., Wang, J., Liu, Y., Bhardwaj, R., Wadhwa, R., Nagao, Y., Shichiri, M., Gao, R.: Designed fabrication of active tumor targeting covalent organic framework nanotherapeutics via a simple post-synthetic strategy. Nano Res. (2023).
  • Soeta, Y., Kambara, A., Onogawa, E.: Psychological responses to low-level transient sounds in background sounds generated by an air conditioner. Appl. Acoust., 202, 109147 (2023).


Molecular and Cellular Design Research Group

  • Shibakami, M.: Paramylon beads, web, and paper. Polymer, 278, 125984 (2023).

Structure-Based Drug Discovery Research Group

  • Sanada, Y., Ikuta, Y., Ding, C., Yimiti, D., Kato, Y., Nakasa, T., Mizuno, S., Takahashi, S., Huang, W., Lotz, M.K., Adachi, N., Miyaki, S.: miR-26a deficiency is associated with bone loss and reduced muscle strength but does not affect severity of cartilage damage in osteoarthritis. Mech. Ageing Dev., 212, 111806 (2023).
  • Furuhata, Y., Egi, E., Murakami, T., Kato, Y.: A Method for Electroporation of Cre Recombinase Protein into Intact Nicotiana tabacum Cells. Plants-Basel, 12(8), 1631 (2023).
  • Yamasaki, K., Adachi, N., Tun, M.M.N., Ikeda, A., Moriya, T., Kawasaki, M., Yamasaki, T., Kubota, T., Nagashima, I., Shimizu, H., Tateno, H., Morita, K.: Core fucose-specific Pholiota squarrosa lectin (PhoSL) as a potent broad-spectrum inhibitor of SARS-CoV-2 infection. FEBS J., 290(2), 412-427 (2023).

Biomolecule Design Research Group

  • Okuno, M., Yamana, K., Kawamura, S., Nishimura, K., Hino, S., Kawasaki, R., Ikeda, A.: Selective Photodynamic Activity of Tetrakis(4-aminophenyl)porphyrins with and without Acetyl Protecting Groups on Cancer and Normal Cells. Chem.-Eur. J., 29(47), e202301385 (2023).
  • Hino, S., Kawasaki, N., Yamano, N., Nakamura, T., Nakayama, A.: Effects of particle size on marine biodegradation of poly(l-lactic acid) and poly(ε-caprolactone). 33, 127813 (2023).
  • Mine, S., Nakabayashi, M., Ishikawa, K.: Crystal structure of thermostable acetaldehyde dehydrogenase from the hyperthermophilic archaeon Sulfolobus tokodaii. Acta Crystallogr. F-Struct. Biol. Commun., F79(6), 159-165 (2023).
  • Himiyama, T., Hamaguchi, T., Yonekura, K., Nakamura, T.: Unnaturally distorted hexagonal protein ring alternatingly reorganized from two distinct chemically modified proteins. Bioconjugate Chem., 34(4), 764-771 (2023).
  • Nakayama, Y., Fukumoto, K., Kusu, Y., Tanaka, R., Shiono, T., Kawasaki, N., Yamano, N., Nakayama, A.: Synthesis, Properties, and Biodegradability of Novel Sequence-Controlled Copolyesters Composed of Glycolic Acid, Dicarboxylic Acids, and C3 or C4 Diols. Polymers, 15(5), 1155-1167 (2023).
  • Kawasaki, R., Kawamura, S., Kodama, T., Yamana, K., Maeda, A., Yimiti, D., Miyaki, S., Hino, S., Ozawa, N., Nishimura, T., Kawamoto, S., Ikeda, A.: Development of a Water-Dispersible Supramolecular Complex of Polyphenol with Polypeptides for Attenuation of the Allergic Response using a Mechanochemical Strategy. Macromol. Biosci., e2200462 (2023).

Advance Genome Design Research Group

  • Zhang, C., Hao, L., Miao, H., Chen, J., Yuan, T., Lei, Z., Zhang, Z., Utsumi, M., Itayama, T., Miura, T., Ihara, I., Maseda, H., Tabassum, S., Shimizu, K.: Emergence of multidrug-resistant Acinetobacter baumannii under fluctuating levofloxacin concentration and its control by chlorine and UV disinfection. Process Saf. Environ. Protect., 173, 344-353 (2023).
  • Fukuda, N.: Apparent diameter and cell density of yeast strains with different ploidy. Sci. Rep., 13, 1513 (2023).

Director, Deputy Director, Prime Senior Researcher, Principal Research Manager, Honda Lab.

  • Katsuya, S., Kawata, Y., Goto, T., Tsubota, J.: Daily Intake of D-β-Hydroxybutyric Acid (D-BHB) Reduces Body Fat in Japanese Adult Participants: A Randomized, Double-Blind, Placebo-Controlled Study. J. Nutr. Sci. Vitaminol., 69(2), 121-128 (2023).
  • Sekiguchi, Y., Teramoto, K., Tourlousse, D.M., Ohashi, A., Hamajima, M., Miura, D., Yamada, Y., Iwamoto, S., Tanaka, K.: A large-scale genomically predicted protein mass database enables rapid and broad-spectrum identification of bacterial and archaeal isolates by mass spectrometry. Genome Biol., 24, 257 (2023).
  • Kikuchi, S., Fujitani, H., Ishii, K., Isshiki, R., Sekiguchi, Y., Tsuneda, S.: Characterisation of bacteria representing a novel Nitrosomonas clade: Physiology, genomics and distribution of missing ammonia oxidizer. Environ. Microbiol. Rep. (2023).
  • Phonbuppha, J., Tinikul. R., Ohmiya, Y., Chaiyen, P.: High Sensitivity and Low-Cost Flavin luciferase (FLUXVc)-based Reporter Gene for Mammalian Cell Expression. J Biol Chem., 104639 (2023).
  • Jimi, N., Bessho-Uehara, M., Nakamura, K., Sakata, M., Hayashi, T., Kanie, S., Mitani, Y., Ohmiya, Y., Tsuyuki, A., Ota, Y., Woo, S.P., Ogoh, K.: Investigating the diversity of bioluminescent marine worm Polycirrus (Annelida), with description of three new species from the Western Pacific. R. Soc. Open Sci., 10(3), 230039 (2023).
  • Niwa, K., Kubota, H., Enomoto, T., Ichino, Y., Ohmiya, Y.: Quantitative Analysis of Bioluminescence Optical Signal. Biosensors-Basel, 13(2), 223 (2023).
  • Kurinomaru, T., Takeda, K., Onaka, M., Kuruma, Y., Takahata, K., Takahashi, K., Sakura, H., Sasaki, A., Noda, N., Honda, S., Shibuya, R., Ikeda, T., Okada, R., Torisu, T., Uchiyama, S.: Optimization of Flow Imaging Microscopy Setting Using Spherical Beads with Optical Properties Similar to Those of Biopharmaceuticals. J. Pharm. Sci. (2023).
  • Yasuzawa, Y., Shibuya, R., Senga, Y., Miyafusa, T., Honda, S.: Determination of the optimal connector length to enhance stability of backbone-circularized granulocyte colony-stimulating factor. FEBS Open Bio, 13, 1910-1921 (2023).
  • Imamura, H., Honda, S.: Cue to Acid-Induced Long-Range Conformational Changes in an Antibody Preceding Aggregation: The Structural Origins of the Subpeaks in Kratky Plots of Small-Angle X-ray Scattering. Int. J. Mol. Sci., 24(15), 12042 (2023).
  • Imamura, H., Ooishi, A., Honda, S.: Getting Smaller by Denaturation: Acid-Induced Compaction of Antibodies. J. Phys. Chem. Lett., 14(16), 3898-3906 (2023).