誌上発表

2025年

• Nobe, M; Maruzuru, Y; Takeshima, K; Maeda, F; Kusano, H; Yoshimura, R; Nishiyama, T; Park, H; Kozaki, Y; Iwami, S; Koyanagi, N; Kato, A; Natsume, T; Adachi, S; Kawaguchi, Y.
  Direct relationship between protein expression and progeny yield of herpes simplex virus 1.
  MBIO. 2025 May 5:e0028025. doi:10.1128/mbio.00280-25
• Oishi, K; Yoshida, Y; Kaida, K; Terai, K; Yamamoto, H; Toyoda, A.
  Potential non-invasive biomarkers of chronic sleep disorders identified by salivary metabolomic profiling among middle-aged Japanese men.
  SCI REP. 2025 Apr 21;15(1):10980. doi:10.1038/s41598-025-95403-1
• Takeda, A; Nonaka, D; Imazu, Y; Fukunaga, T; Hamada, M.
  REPrise: de novo interspersed repeat detection using inexact seeding.
  MOB DNA. 2025 Apr 3;16(1):16. doi:10.1186/s13100-025-00353-0
• Zhang, W; Obuchi, S; Teramura, Y.
  Analysis of cellular responses following interaction with extracellular vesicles derived from HEK293T and human adipose derived stem cells.
  SCI REP. 2025 Apr 7;15(1):11835. doi:10.1038/s41598-025-95559-w
• Barbhuiya, PA; Yoshitomi, R; Pathak, MP.
  Understanding the Link Between Sterol Regulatory Element Binding Protein (SREBPs) and Metabolic Dysfunction Associated Steatotic Liver Disease (MASLD.
  CURR OBES REP. 2025 Apr 14;14(1):36. doi:10.1007/s13679-025-00626-y
• Miyashita, SI; Ogura, T; Matsuura, SI; Fukuda, E.
  Quantitative Evaluation of Iron-Containing Proteins Bound to Mesoporous Silica Microspheres by Inductively Coupled Plasma Mass Spectrometry and Confocal Laser Raman Microscopy.
  MOLECULES. 2025 Mar 11;30(6):1252. doi:10.3390/molecules30061252
• Takada, N; Ishikawa, M; Sato, K; Kunikata, H; Ninomiya, T; Hanyuda, A; Fukuda, E; Yamaguchi, K; Ono, C; Kirihara, T; Shintani, C; Tsusu, C; Osanai, A; Goshima, N; Izumi, Y; Zorumski, CF; Nakazawa, T.
  Proteome-Wide Analysis of Autoantibodies in Open-Angle Glaucoma in Japanese Population: A Pilot Study.
  BIOMEDICINES. 2025 Mar 14;13(3):718. doi:10.3390/biomedicines13030718
• Prasad, K;Kaul, SC; Wadhwa, R; Guruprasad, KP; Satyamoorthy, K.
  Cellular oxidative stress and sirtuins mediate regulation of senescence and neuronal differentiation by withaferin A.
  FREE RADIC BIOL MED. 2025 Mar 26:S0891-5849(25)00188-1. doi:10.1016/j.freeradbiomed.2025.03.038
• Ishii, N; Koja, Y; Noguchi, K; Yohda, M; Takeda, S.
  Enhancing specimen preparation for transmission electron microscopy: Trypan Blue staining and low-melting-point agar embedding for ultra-thin cell sections.
  J BIOSCI BIOENG. 2025 Mar 6:S1389-1723(25)00029-5. doi:10.1016/j.jbiosc.2025.02.003
• Boottanun, P; Fuseya, S; Kuno, A.
  Toward spatial glycomics and glycoproteomics: Innovations and applications.
  BBA ADV. 2025 Feb. doi:10.1016/j.bbadva.2025.100146
• Ohkawa, M; Ohshiro, T; Koseki, J; Kon, S; Ozeki, Y; Taniguchi, M; Shimamura, T; Konno, M.
  New RNA modifications induce malignancy for pancreatic cancer.
  CANCER SCIENCE. 2025 Mar. doi: 10.1111/cas.16114
• Sato, T; Sugiyama, D; Koseki, J; Kojima, Y; Hattori, S; Sone, K; Nishinakamura, H; Ishikawa, T; Ishikawa, Y; Kato, T; Kiyoi, H; Nishikawa, H.
  Sustained inhibition of CSF1R signaling augments antitumor immunity through inhibiting tumor-associated macrophages.
  JCI INSIGHT. 2025 JAN 9. doi:10.1172/jci.insight.178146
• Tateno, H; Mahal, LK; Feizi, T; Kettner, C; Paulson, JC.
  The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting lectin microarray data.
  GLYCOBIOLOGY. 2025 Feb 19. doi:10.1093/glycob/cwaf006
• Ishii, N; Tateno, H.
  Preparation of Small Extracellular Vesicles Using Sequential Ultrafiltration with Regenerated Cellulose Membranes of Different Molecular Weight Cutoffs: A Study of Morphology and Size by Electron Microscopy.
  MICROSC MICROANAL. 2025 Jan 13. doi:10.1093/mam/ozae133
• Ishii, N; Ogawa, Y.
  Grids designed for tomography: Stereovision transmission electron microscopy makes it easy to determine the winding handedness of helical nanocoils.
  MICRON. 2025 Mar;190:103784. Epub 2025 Jan 7. doi:10.1016/j.micron.2025.103784
• Radhakrishnan, N; Kaul, SC; Wadhwa, R; Yang, LW; Sundar, D.
  Establishing a General Atomistic Model for the Stratum Corneum Lipid Matrix Based on Experimental Data for Skin Permeation Studies.
  INT J MOL SCI. 2025 Jan 15;26(2):674. doi:10.3390/ijms26020674
• Zhang, H; Kim, H; Yuan, T; Zhang, Z; Kaul, SC; Wadhwa, R.
  Molecular Characterization of Cancer Preventive and Therapeutic Potential of Three Antistress Compounds, Triethylene Glycol, Withanone, and Withaferin A.
  INT J MOL SCI. 2025 Jan 9;26(2):493. doi:10.3390/ijms26020493
• Prasad, K; Raghu, KS; Maruthiyodan, S; Wadhwa, R; Kaul, SC; Satyamoorthy, K; Guruprasad, KP.
  Promotion of cellular differentiation and DNA repair potential in brain cancer cells by Shankhpushpi, (Clitoria ternatea L.) with rasayana properties in vitro.
  J AYURVEDA INTEGR MED. 2025 Jan 10;16(1):101050. doi:10.1016/j.jaim.2024.101050
• Yamagishi, A; Tokuoka, R; Imai, K; Mizusawa, M; Susaki, M; Uchida, K; Kijima, ST; Nagasaki, A; Takeshita, D; Yoshikawa, C; Uyeda, TQP; Nakamura, C.
  Nestin Forms a Flexible Cytoskeleton by Means of a Huge Tail Domain That Is Reversibly Stretched and Contracted by Weak Forces.
  CELLS. 2025 Jan 17;14(2):138. doi:10.3390/cells14020138

2024年

• Limjanthong, N; Sugiura, S; Oda, T; Takusari, F; Fujiwara, Y; Miyazaki, T; Naganuma, K; Ohnuma, K.
  Monitoring and optimization of the microenvironment in a gravity-driven microfluidic system placed on a slow-tilting table.
  J BIOSCI BIOENG. 2025 Apr;139(4):311-318. doi:10.1016/j.jbiosc.2024.12.014
• Teramura, Y; Cabral, H.
  Foreword to the focus issue: frontline research on biomaterials-based bioengineering for future therapy.
  SCI TECHNOL ADV MATER. 2025 Feb 21;26(1):2471206. doi:10.1080/14686996.2025.2471206
• Zhu, J; Cai, HL; Goto, S; Shimada, M; Yurimoto, H; Sakai, Y; Yoko-O, T; Chiba, Y; Nakagawa, T.
  Physiological role of the FDH1 gene in methylotrophic yeast Komagataella phaffii and carbon recovery as formate during methylotrophic growth of the fdh1-deletion strain.
  J BIOSCI BIOENG. 2025 Jan 17. doi:10.1016/j.jbiosc.2024.12.007
• Zhang, Y; Yang, W; Kumagai, Y; Loza, M; Yang, Y; Park, SJ; Nakai, K.
  In Silico Analysis Revealed Marco (SR-A6) and Abca1/2 as Potential Regulators of Lipid Metabolism in M1 Macrophage Hysteresis.
  INT J MOL SCI. 2024 Dec 26. doi:10.3390/ijms26010111
• Keisham, S; Tateno, H.
  Emerging technologies for single-cell glycomics.
  BBA ADV. 2024 Nov 26. doi:10.1016/j.bbadva.2024.100125
• Hashimoto, T; Suenaga, H; Shin-Ya, K.
  Application of Cas9-Based Gene Editing to Engineering of Nonribosomal Peptide Synthetases.
  CHEMBIOCHEM. 2024 Dec 30:e202400765. doi:10.1002/cbic.202400765
• Shimazaki, H; Uojima, H; Yamasaki, K; Obayashi, T;Fuseya, S; Sato, T; Mizokami, M; Kuno, A.
  M2BPgs-HCC: An Automated Multilectin Bead Array Indicating Aberrant Glycosylation Signatures Toward Hepatitis C Virus-Associated Hepatocellular Carcinoma Prognosis.
  MOLECULES. 2024 Nov 28;29(23):5640. doi:10.3390/molecules29235640
• Nagai-Okatani, C; Tomioka, A; Tominaga, D; Sakaue, H; Kuno, A; Kaji, H.
  Inter-tissue glycan heterogeneity: site-specific glycoform analysis of mouse tissue N-glycoproteomes using MS1-based glycopeptide detection method assisted by lectin microarray.
  ANALYTICAL AND BIOANALYTICAL CHEMISTRY. 2024 Dec 16. doi:10.1007/s00216-024-05686-y
• Kudo, K; Nishimura, T; Miyako, K; Suenaga, H; Shin-Ya, K.
  A new cannabigerolic acid derivative and its unprenylated precursor produced through the reconstitution of cannabinoid biosynthesis in Streptomyces.
  J ANTIBIOT (Tokyo). 2024 Dec 3. doi:10.1038/s41429-024-00793-5
• Li, D; Han, H; Sun, Y; Zhang, H; Yoshitomi, R; Kaul, SC; Wadhwa, R.
  Molecular Insights into the Inhibition of Lipid Accumulation in Hepatocytes by Unique Extracts of Ashwagandha.
  INT J MOL SCI. 2024 Nov 14;25(22):12256. doi:10.3390/ijms252212256
• Hossain, AS; Clarin, MTRDC; Kimura, K; Biggin, G; Taga, Y; Uto, K; Yamagishi, A; Motoyama, E; Narenmandula; Mizuno, K; Nakamura, C; Asano, K; Ohtsuki, S; Nakamura, T; Kanki, S; Baldock, C; Raja, E; Yanagisawa, H.
  Fibrillin-1 G234D mutation in the hybrid1 domain causes tight skin associated with dysregulated elastogenesis and increased collagen cross-linking in mice.
  MATRIX BIOL. 2024 Nov 28:S0945-053X(24)00142-2. doi:10.1016/j.matbio.2024.11.006
• Okamura, Y; Gochi, K; Ishikawa, T; Hayashi, T; Fuseya, S; Suzuki, R; Kanai, M; Inoue, Y; Murakami, Y; Sadaki, S; Jeon, H; Hayama, M; Ishii, H; Tsunakawa, Y; Ochi, H; Sato, S; Hamada, M; Abe, C; Morita, H; Okada, R; Shiba, D; Muratani, M; Shinohara, M; Akiyama, T; Kudo, T; Takahashi, S.
  Impact of microgravity and lunar gravity on murine skeletal and immune systems during space travel.
  SCI REP. 2024 Nov 20;14(1):28774. doi:10.1038/s41598-024-79315-0
• Yamaguchi, Y; Ishii, K; Koizumi, S; Sakaue, H; Maruno, T; Fukuhara, M; Shibuya, R; Tsunaka, Y; Matsushita, A; Bandoh, K; Torisu, T; Murata-Kishimoto, C; Tomioka, A; Mizukado, S; Kaji, H; Kashiwakura, Y; Ohmori, T; Kuno, A; Uchiyama, S.
  Mucin-Type O-Glycosylation in Viral Protein 2 Indirectly Affects the Transduction Efficiency of Recombinant Adeno-Associated Virus Serotype 6.
  MOLECULAR THERAPY. Vol 32 No 4S1, 688-689. 22 APR 2024. doi:
• Kusano, T; Sotani, Y; Takeda, R; Hatano, A; Kawata, K; Kano, R; Matsumoto, M; Kano, Y; Hoshino, D.
  Time-series transcriptomics reveals distinctive mRNA expression dynamics associated with gene ontology specificity and protein expression in skeletal muscle after electrical stimulation-induced resistance exercise.
  FASEB J. 2024 Nov 30;38(22):e70153. doi:10.1096/fj.202401420RR
• Sato, T; Abe, K; Koseki, J; Seto, M; Yokoyama, J; Akashi, T; Terada, M; Kadowaki, K; Yoshida, S; Yamashiki, YA; Shimamura, T.
  Survivability and life support in sealed mini-ecosystems with simulated planetary soils.
  SCI REP. 2024 Nov 1;14(1):26322. doi: 10.1038/s41598-024-75328-x
• Zhou, J; Sekiguchi, Y; Sano, M; Nishimura, K; Hisatake, K; Fukuda, A.
  A Sendai virus-based expression system directs efficient induction of chondrocytes by transcription factor-mediated reprogramming.
  SCI REP. 2024 Oct 29;14(1):26004. doi: 10.1038/s41598-024-77508-1
• Yoshinori, F; Imai, K; Horton, P.
  Prediction of mitochondrial targeting signals and their cleavage sites.
  METHODS ENZYMOL. 2024 Sep 11. doi: 10.1016/bs.mie.2024.07.026
• Mawaribuchi, S; Iida, M; Haramoto, Y.
  Fusion of breast cancer MCF-7 cells with mesenchymal stem cells rearranges interallelic gene expression and enhances cancer malignancy.
  BIOCHEM BIOPHYS RES COMMUN. 2024 Oct 23:736:150887. doi: 10.1016/j.bbrc.2024.150887
• Kaushal, S; Gupta, S; Shefrin, S; Vora, DS; Kaul, SC; Sundar, D; Wadhwa, R; Dhanjal, JK.
  Synthetic and Natural Inhibitors of Mortalin for Cancer Therapy.
  CANCERS (Basel). 2024 Oct 13;16(20):3470. doi: 10.3390/cancers16203470
• Yamamoto, K; Uzaki, M; Takahashi, K; Mimura, T.
  Current status of MSI research in Japan to measure the localization of natural products in plants.
  CURR OPIN PLANT BIOL. 2024 Oct 19;82:102651. doi: 10.1016/j.pbi.2024.102651
• Sakaue, H; Kuno, A.
  isoAsp-Quest: Workflow development for isoAsp identification using database searches.
  J BIOCHEM. 2024 Oct 23:mvae071. doi: 10.1093/jb/mvae071
• Shimazaki, H; Fuseya, S; Ono, A; Ootani, H; Mizukado, S; Obayashi, T; Tanaka, N; Kajiyama, K; Ashitomi, M; Yamauchi, K; Yasuda, S; Miyabe, T; Nakamura, K; Segawa, O; Kuno, A; Sawakami, K.
  Benchtop glyco-analyzer: from development of biomarker to potential use in clinical setting.
  CLINICAL CHEMISTRY. 2024 Oct 1. doi: 10.1093/clinchem/hvae106.381
• Kakizuka, T; Natsume, T; Nagai, T.
  Compact lens-free imager using a thin-film transistor for long-term quantitative monitoring of stem cell culture and cardiomyocyte production.
  LAB ON A CHIP. 2024 OCT 14. doi: 10.1039/d4lc00528g
• Kumagai, Y.
  BootCellNet, a resampling-based procedure, promotes unsupervised identification of cell populations via robust inference of gene regulatory networks.
  PLOS COMPUT BIOL. 2024 Sep 30;20(9):e1012480. doi: 10.1371/journal.pcbi.1012480
• Wadhwa, R; Wang, J; Shefrin, S; Zhang, H; Sundar, D; Kaul, SC.
  Molecular Insights into the Anticancer Activity of Withaferin-A: The Inhibition of Survivin Signaling.
  CANCERS (Basel). 2024 Sep 5;16(17):3090. doi: 10.3390/cancers16173090
• Morikawa, K; Nagasaki, A; Sun, L; Kawase, E; Ebihara, T; Shirayoshi, Y.
  Optogenetic control of early embryos labeling using photoactivatable Cre recombinase 3.0.
  FEBS OPEN BIO. 2024 Sep 2. doi: 10.1002/2211-5463.13862
• Koshiguchi, M; Yonezawa, N; Hatano, Y; Suenaga, H; Yamagata, K; Kobayashi, S.
  A system to analyze the initiation of random X-chromosome inactivation using time-lapse imaging of single cells.
  SCI REP. 2024 Sep 2;14(1):20327. doi: 10.1038/s41598-024-71105-y
• Kurosu, J; Sakamaki, T; Kanai, K; Morishita, K; Sumaru, K; Tsutsumi, J.
  Spatiotemporal dynamics of microscopic biological barrier visualized by electric-double-layer modulation imaging.
  BIOSENS BIOELECTRON. 2024 Aug 30;266:116721. doi: 10.1016/j.bios.2024.116721
• Inuzuka, N; Shobayashi, Y; Tateshima, S; Sato, Y; Ohba, Y; Ishihara, K; Teramura, Y.
  Stable and Thin-Polymer-Based Modification of Neurovascular Stents with 2-Methacryloyloxyethyl Phosphorylcholine Polymer for Antithrombogenicity.
  BIOENGINEERING (Basel). 2024 Aug 15;11(8):833. doi: 10.3390/bioengineering11080833
• Hayashi, Y; Tajiri, K; Ozawa, T; Angata, K; Sato, T; Togayachi, A; Nagashima, I; Shimizu, H; Murayama, A; Muraishi, N; Narimatsu, H; Yasuda, I.
  Impact of preS1 Evaluation in the Management of Chronic Hepatitis B Virus Infection.
  MEDICINA (Kaunas). 2024 Aug 16;60(8):1334. doi: 10.3390/medicina60081334
• Tokuoka, SM; Hamano, F; Kobayashi, A; Adachi, S; Andou, T; Natsume, T; Oda, Y.
  Plasma proteomics and lipidomics facilitate elucidation of the link between Alzheimers disease development and vessel wall fragility.
  SCI REP. 2024 Aug 27;14(1):19901. doi: 10.1038/s41598-024-71097-9
• Sato, Y; Baba, T; Uchida, T; Chung, UI; Teramura, Y.
  Cell membrane fusion induced by surface modification with cell-penetrating peptide–lipid conjugates that facilitates close contact between distinct membranes.
  Mater. Adv. 2024 May 11. doi: 10.1039/D4MA00193A
• Satoh, T; Yagi-Utsumi, M; Ishii, N; Mizushima, T; Yagi, H; Kato, R; Tateno, H; Matsuo, I; Kato, K; Suzuki, T; Yoshida, Y.
  Structural basis of sugar recognition by SCFFBS2 ubiquitin ligase involved in NGLY1 deficiency.
  FEBS LETTERS. 2024 Aug 22. doi: 10.1002/1873-3468.15003
• Shi, Y; He, H; Zhang, H; Yuan, T; Zhang, Z; DeSilva, R; Ishida, Y; Terao, K; Kaul, SC; Wadhwa, R.
  Cyclodextrin-assisted Aqueous Extract of Cinnamon for Cancer and Stress Management.
  CURR TOP MED CHEM. 2024 Aug 20. doi: 10.2174/0115680266309291240808114508
• Nagai-Okatani, C; Tominaga, D; Tomioka, A; Sakaue, H; Goda, N; Ko, S; Kuno, A; Kaji, H.
  GRable version 1.0: A software tool for site-specific glycoform analysis with improved MS1-based glycopeptide detection with parallel clustering and confidence evaluation with MS2 information.
  MOL CELL PROTEOMICS. 2024 Aug 22:100833. doi: 10.1016/j.mcpro.2024.100833
• Páez-Watson, T; Tomás-Martínez, S; de, Wit R; Keisham, S; Tateno, H; van, Loosdrecht MCM; Lin, Y.
  Sweet Secrets: Exploring Novel Glycans and Glycoconjugates in the Extracellular Polymeric Substances of “Candidatus Accumulibacter”.
  ACS ES T WATER. 2024 Jul 12;4(8):3391-3399. doi: 10.1021/acsestwater.4c00247
• Tomita, T; Nakajima, Y; Ohmiya, Y; Miyazaki, K.
  Novel three-dimensional live skin-like in vitro composite for bioluminescence reporter gene assay.
  FEBS JOURNAL. 024 Aug 15. doi: 10.1111/febs.17246
• Sato, Y; Zhang, WX; Baba, T; Chung, UI; Teramura, Y.
  Extracellular vesicle-liposome hybrids via membrane fusion using cell-penetrating peptide-conjugated lipids.
  REGENERATIVE THERAPY. 2024 Jul 29. doi: 10.1016/j.reth.2024.07.006
• Xu, Z; Zhang, H; Tian, J; Ku, X; Wei, R; Hou, J; Zhang, C; Yang, F; Zou, X; Li, Y; Kaji, H; Tao, SC; Kuno, A; Yan, W; Da, LT; Zhang, Y.
  O-glycosylation of SARS-CoV-2 spike protein by host O-glycosyltransferase strengthens its trimeric structure.
  ACTA BIOCHIM BIOPHYS SIN (Shanghai). 2024 Jul 26. doi: 10.3724/abbs.2024127
• Ma, ST; Yoda, H; Dang, T; Yang, JQ; Ando, I; Sato, Y; Teramura, Y; Tabata, H; Matsui, H.
  Light Polarization Effects of Chemical Sensing in the Mid-Infrared Region Using ZnO: Ga-Based Plasmonic Surface Lattice Resonances.
  JOURNAL OF PHYSICAL CHEMISTRY C. July 15, 2024. doi: 10.1021/acs.jpcc.4c02354
• Kano, R; Kusano, T; Takeda, R; Shirakawa, H; Poole, DC; Kano, Y; Hoshino, D.
  Eccentric contraction increases hydrogen peroxide levels and alters gene expression through Nox2 in skeletal muscle of male mice.
  J APPL PHYSIOL (1985). 2024 Jul 25. doi: 10.1152/japplphysiol.00335.2024
• Yamasaki, K; Tsuzuki, S; Tateno, H.
  Stabilization of the Protein Structure by the Many-Body Cooperative Effect in the NH/π Hydrogen-bonding Tryptophan Triad.
  J PHYS CHEM B. 2024 Jul 17. doi: 10.1021/acs.jpcb.4c02391
• Arai, J; Hayakawa, Y; Tateno, H; Fujiwara, H; Kasuga, M; Fujishiro, M.
  The role of gastric mucins and mucin-related glycans in gastric cancers.
  CANCER SCI. 2024 Jul 19. doi: 10.1111/cas.16282
• Fuseya, S; Ono, A; Ootani, H; Mizukado, S; Obayashi, T; Tanaka, N; Shimazaki, H; Kajiyama, K; Ashitomi, M; Yasuda, S; Miyabe, T; Nakamura, K; Segawa, O; Sawakami, K; Kuno, A.
  Rapid Glyco-Qualitative Assessment of Recombinant Proteins Using a Fully Automated System.
  J VIS EXP. 2024 Jun 28;(208). doi: 10.3791/66571
• Akagi, Y; Norimoto, A; Kawamura, T; Kida, YS.
  Label-Free Assessment of Neuronal Activity Using Raman Micro-Spectroscopy.
  MOLECULES. 2024 Jul 3;29(13):3174. doi: 10.3390/molecules29133174
• Inuzuka, N; Shobayashi, Y; Tateshima, S; Sato, Y; Ohba, Y; Ekdahl, KN; Nilsson, B; Teramura, Y.
  Stent coating containing a charged silane coupling agent that regulates protein adsorption to confer antithrombotic and cell-adhesion properties.
  SCI REP. 2024 Jul 10;14(1):15178. doi: 10.1038/s41598-024-65832-5
• Shu, Y; Otake, M; Seta, Y; Hori, K; Kuramochi, A; Ohba, Y; Teramura, Y.
  Activation of cellular antioxidative stress and migration activities by purified components from immortalized stem cells from human exfoliated deciduous teeth.
  SCI REP. 2024 Jul 3;14(1):15340. doi: 10.1038/s41598-024-66213-8
• Wadhwa, R; Yang, S; Meidinna, HN; Sari, AN; Bhargava, P;Kaul, SC.
  Mixtures of Three Mortaparibs with Enhanced Anticancer, Anti-Migration, and Antistress Activities: Molecular Characterization in p53-Null Cancer Cells.
  Cancers (Basel). 2024 Jun 17;16(12):2239. doi: 10.3390/cancers16122239
• Wadhwa, R; Hegde, M; Zhang, HY; Kaul, A; Wang, J; Ishida, Y; Terao, K; Kunnumakkara, AB; Kaul, SC.
  Antistress and Antiaging Potentials of Alpha-Lipoic Acid: Insights from Cell Culture-Based Experiments.
  APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY. 2024 Jun 28. doi: 10.1007/s12010-024-04994-4
• Wang, ZG; Yang, ZH; Shishido, M; Daoudi, K; Hidaka, M; Tateno, H; Futai, E; Ogawa, T.
  Microcystis viridis NIES-102 Cyanobacteria Lectin (MVL) Interacts with SARS-CoV-2 Spike Protein Receptor Binding Domains (RBDs) via Protein-Protein Interaction.
  INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 2024 Jun 18;25(12):6696. doi: 10.3390/ijms25126696
• Fujii, Y; Kamata, K; Gerdol, M; Hasan, I; Rajia, S; Kawsar, SMA; Padma, S; Chatterjee, BP; Ohkawa, M; Ishiwata, R; Yoshimoto, S; Yamada, M; Matsuzaki, N; Yamamoto, K; Niimi, Y; Miyanishi, N; Konno, M; Pallavicini, A; Kawasaki, T; Ogawa, Y; Ozeki, Y; Fujita, H.
  Multifunctional Cell Regulation Activities of the Mussel Lectin SeviL: Induction of Macrophage Polarization toward the M1 Functional Phenotype.
  MARINE DRUGS. 2024 Jun 11;22(6):269. doi: 10.3390/md22060269
• Hayashi, T; Sadaki, S; Tsuji, R; Okada, R; Fuseya, S; Kanai, M; Nakamura, A; Okamura, Y; Muratani, M; Wenchao, G; Sugasawa, T; Mizuno, S; Warabi, E; Kudo, T; Takahashi, S; Fujita, R.
  Dual-specificity phosphatases 13 and 27 as key switches in muscle stem cell transition from proliferation to differentiation.
  STEM CELLS. 2024 Jul 8:sxae045. doi: 10.1093/stmcls/sxae045
• Shimada, N; Kameyama, A; Watanabe, M; Sahara, T; Matsuzawa, T.
  Identification and characterization of xyloglucan-degradation related α-1,2-l-fucosidase in Aspergillus oryzae.
  J BIOSCI BIOENG. 2024 Jun 12:S1389-1723(24)00159-2. doi: 10.1016/j.jbiosc.2024.05.011
• Watanabe, A; Koyano, F; Imai, K; Hizukuri, Y; Ogiwara, S; Ito, T; Miyamoto, J; Shibuya, C; Kimura, M; Toriumi, K; Motono, C; Arai, M; Tanaka, K; Akiyama, Y; Yamano, K; Matsuda, N.
  The origin of esterase activity of Parkinsons disease causative factor DJ-1 implied by evolutionary trace analysis of its prokaryotic homolog HchA.
  J BIOL CHEM. 2024 Jun 13:107476. doi: 10.1016/j.jbc.2024.107476
• Tomita, T; Wadhwa, R; Onishi, Y.
  Natural Compounds that Modulate Circadian Rhythms.
  CURR TOP MED CHEM. 2024 May 30. doi: 10.2174/0115680266300569240514101800
• Kato, A; Iwasaki, R; Takeshima, K; Maruzuru, Y; Koyanagi, N; Natsume, T; Kusano, H; Adachi, S; Kawano, S; Kawaguchi, Y.
  Identification of a novel neurovirulence factor encoded by the cryptic orphan gene UL31.6 of herpes simplex virus 1.
  J VIROL. 2024 May 31:e0074724. doi: 10.1128/jvi.00747-24
• Yamaguchi, Y; Ishii, K; Koizumi, S; Sakaue, H; Maruno, T; Fukuhara, M; Shibuya, R; Tsunaka, Y; Matsushita, A; Bandoh, K; Torisu, T; Murata-Kishimoto, C; Tomioka, A; Mizukado, S; Kaji, H; Kashiwakura, Y; Ohmori, T; Kuno, A;; Uchiyama, S.
  Glycosylation of recombinant adeno-associated virus serotype 6.
  MOL THER METHODS CLIN DEV. 2024 Apr 25;32(2):101256. doi: 10.1016/j.omtm.2024.101256
• Nishimura, T; Kudo, K; Izumikawa, M; Kozone, I; Hashimoto, J; Kagaya, N; Suenaga, H; Takeuchi, K; Shin-Ya, K.
  Isolation and Structure Elucidation of JBIR-157, a Skeletally Novel Aromatic Polyketide Produced by the Heterologous Expression of a Cryptic Gene Cluster.
  CHEM PHARM BULL (Tokyo). 2024;72(5):475-479. doi: 10.1248/cpb.c24-00144
• Song, X; Nihashi, Y; Imai, Y; Mori, N; Kagaya, N; Suenaga, H; Shin-Ya, K; Yamamoto, M; Setoyama, D; Kunisaki Y; Kida, YS .
  Collagen Lattice Model, Populated with Heterogeneous Cancer-Associated Fibroblasts, Facilitates Advanced Reconstruction of Pancreatic Cancer Microenvironment.
  INT J MOL SCI. 2024 Mar 27;25(7):3740. doi: 10.3390/ijms25073740
• Nie, H; Saini, P; Miyamoto, T; Liao, L; Zielinski, RJ; Liu, H; Zhou, W; Wang, C; Murphy, B; Towers, M; Yang, T; Qi, Y; Kannan, T; Kossenkov, A; Tateno, H; Claiborne, DT; Zhang, N; Abdel-Mohsen, M; Zhang, R.
  Targeting branched N-glycans and fucosylation sensitizes ovarian tumors to immune checkpoint blockade.
  NAT COMMUN. 2024 Apr 2;15(1):2853. doi: 10.1038/s41467-024-47069-y
• Arai, J; Hayakawa, Y; Tateno, H; Murakami, K; Hayashi, T; Hata, M; Matsushita, Y; Kinoshita, H; Abe, S; Kurokawa, K; Oya, Y; Tsuboi, M; Ihara, S; Niikura, R; Suzuki, N; Iwata, Y; Shiokawa, T; Shiomi, C; Uekura, C; Yamamoto, K; Fujiwara, H; Kawamura, S; Nakagawa, H; Mizuno, S; Kudo, T; Takahashi, S; Ushiku, T; Hirata, Y; Fujii, C; Nakayama, J; Shibata, S; Woods, S; Worthley, DL; Hatakeyama, M; Wang, TC; Fujishiro, M.
  Impaired glycosylation of gastric mucins drives gastric tumorigenesis and serves as a novel therapeutic target.
  GASTROENTEROLOGY. 2024 Apr 5:S0016-5085(24)00363-9. doi: 10.1053/j.gastro.2024.03.037
• Hiono, T; Sakaue, H; Tomioka, A; Kaji, H; Sasaki, M; Orba, Y; Sawa, H; Kuno, A.
  Combinatorial Approach with Mass Spectrometry and Lectin Microarray Dissected Site-Specific Glycostem and Glycoleaf Features of the Virion-Derived Spike Protein of Ancestral and γ Variant SARS-CoV-2 Strains.
  J PROTEOME RES. 2024 Mar 27. doi: 10.1021/acs.jproteome.3c00874
• Miura, I; Shams, F; Ohki, J; Tagami, M; Fujita, H; Kuwana, C; Nanba, C; Matsuo, T Ogata, M; Mawaribuchi, S; Shimizu, N; Ezaz, T.
  Multiple Transitions between Y Chromosome and Autosome in Tagos Brown Frog Species Complex.
  GENES (Basel). 2024 Feb 26;15(3):300. doi: 10.3390/genes15030300
• Hagihara, H; Shoji, H; Hattori, S; Sala, G; Takamiya, Y; Tanaka, M; Ihara, M; Shibutani, M; Hatada, I; Hori, K;... Oishi, K; ... Miyakawa, T.
  Large-scale animal model study uncovers altered brain pH and lactate levels as a transdiagnostic endophenotype of neuropsychiatric disorders involving cognitive impairment.
  Elife. 2024 Mar 26:12:RP89376. doi: 10.7554/eLife.89376
• Nakahashi, H; Oda, T; Shimomura, O; Akashi, Y; Takahashi, K; Miyazaki, Y; Furuta, T; Kuroda, Y; Louphrasitthiphol, P; Mathis, BJ; Tateno, H.
  Aberrant Glycosylation in Pancreatic Ductal Adenocarcinoma 3D Organoids Is Mediated by KRAS Mutations.
  J ONCOL. 2024 Mar 18;2024:1529449. doi: 10.1155/2024/1529449

2023年

• Ohkura, N; Morimoto-Kamata ,R; Kamikubo, Y; Takahashi, Y; Oishi, K.
  Hypofibrinolytic phenotype in Tsumura Suzuki Obese Diabetes (TSOD) mice unrelated to hyperglycemia.
  Drug Discov Ther. 2023 Nov 18;17(5):346-350. doi: 10.5582/ddt.2023.01064
• Ohkura, N; Morimoto-Kamata, R; Oishi, K; Higo-Yamamoto, S; Fujinami, A; Inoue, KI; Ohta, M.
  Supplementation with Ashitaba (Angelica keiskei) yellow stem exudate prevents aging-induced thrombotic tendencies and systemic inflammation without affecting body weight gain in mice.
  J Med Food. 2023 Nov;26(11):843-848. doi: 10.1089/jmf.2023.K.0140
• Oishi, K; Yajima, Y; Yoshida, Y; Hagihara, H; Miyakawa, T; Higo-Yamamoto, S; Toyoda, A.
  Metabolic profiles of saliva in male mouse models of chronic sleep disorders induced by psychophysiological stress.
  Sci Rep. 2023;13(1):11156. doi: 10.1038/s41598-023-38289-1
• Kanie, S; Wu, C; Kihira, K; Yasuno, R; Mitani, Y; Ohmiya, Y.
  Bioluminescence of (R)-Cypridina Luciferin with Cypridina Luciferase.
  INT J MOL SCI. 2024 Feb 26;25(5):2699. doi: 10.3390/ijms25052699
• Sakata, S; Li, J; Yasuno, Y; Shinada, T; Shin-ya, K;Katsuyama, Y; Ohnishi, Y.
  Identification of the cirratiomycin biosynthesis gene cluster in Streptomyces cirratus: elucidation of the biosynthetic pathways for 2,3-diaminobutyric acid and hydroxymethylserine.
  CHEMISTRY. 2024 Mar 8:e202400271. doi: 10.1002/chem.202400271
• Zheng, Y; Morita, N; Takagi, H; Shiozaki-Sato, Y; Ishikawa, J; Shin-ya, K;Takahashi, S.
  Alanyl-tRNA Synthetase-like Enzyme-Catalyzed Aminoacylation in Nucleoside Sulfamate Ascamycin Biosynthesis.
  ACS CATALYSIS. 2024 FEB 20. doi: 10.1021/acscatal.3c05667
• Kudo, K; Nishimura, T; Izumikawa, M; Kozone, I; Hashimoto, J; Fujie, M; Suenaga, H; Ikeda, H; Satoh, N; Shin-Ya, K.
  Capability of a large bacterial artificial chromosome clone harboring multiple biosynthetic gene clusters for the production of diverse compounds.
  J ANTIBIOT (Tokyo). 2024 Mar 4. doi: 10.1038/s41429-024-00711-9
• Miyashita, S; Ogura, T; Matsuura, S; Fukuda, E.
  Particle Size Measurement and Detection of Bound Proteins of Non-Porous/Mesoporous Silica Microspheres by Single-Particle Inductively Coupled Plasma Mass Spectrometry.
  MOLECULES. 2024 Feb 6. 29(5):1086. doi: 10.3390/molecules29051086
• Phuyathip, W; Putthisen, S; Panawan O, Ma-In P; Teeravirote, K; Sintusen, P; Udomkitkosol, S; Detarya, M; Luang. S; Mahalapbutr, P; Sato, T; Kuno, A; Chuangchaiya, S; Silsirivanit, A.
  Role of Wisteria floribunda agglutinin binding glycans in carcinogenesis and metastasis of cholangiocarcinoma.
  HISTOCHEM CELL BIOL. 2024 Feb 23. doi: 10.1007/s00418-024-02270-4
• Qayyum, MZ; Imashimizu, M; Leanca, M; Vishwakarma, RK; Riaz-Bradley, A; Yuzenkova, Y; Murakami, KS.
  Structure and function of the Si3 insertion integrated into the trigger loop/helix of cyanobacterial RNA polymerase.
  PROC NATL ACAD SCI U S A. 2024 Feb 20;121(8):e2311480121. doi: 10.1073/pnas.2311480121
• Nagashima, I; Shimizu, H.
  Preparation of Mucin Glycopeptides by Organic Synthesis.
  METHODS MOL BIOL. 2024;2763:187-199. doi: 10.1007/978-1-0716-3670-1_16
• Matsuda, A; Boottanun, P; Koizumi, S; Nagai, M; Kuno, A.
  Differential Glycoform Analysis of MUC1 Derived from Biological Specimens Using an Antibody-Overlay Lectin Microarray.
  METHODS MOL BIOL. 2024;2763:223-236. doi: 10.1007/978-1-0716-3670-1_19
• Higo, J; Bekker, GJ; Kamiya, N; Fukuda, I; Fukunishi, Y;.
  Binding free-energy landscapes of small molecule binder and non-binder to FMN riboswitch: All-atom molecular dynamics.
  BIOPHYS PHYSICOBIOL. 2023 Dec 13;20(4):e200047. doi: 10.2142/biophysico.bppb-v20.0047
• Sun, L; Morikawa, K; Sogo, Y; Sugiura, Y.
  MHY1485 potentiates immunogenic cell death induction and anti-cancer immunity following irradiation.
  J RADIAT RES. 2024 Feb 8:rrad107. doi: 10.1093/jrr/rrad107
• Dong, W; Kameyama, A.
  Succinylation-Alcian Blue Staining of Mucins on Polyvinylidene Difluoride Membrane.
  METHODS MOL BIOL. 2024;2763:111-117. doi: 10.1007/978-1-0716-3670-1_9
• Kameyama, A.
  Eliminative Oximation of O-Glycans from Mucins.
  METHODS MOL BIOL. 2024;2763:151-158. doi: 10.1007/978-1-0716-3670-1_13
• Kameyama, A.
  Supported Molecular Matrix Electrophoresis.
  METHODS MOL BIOL. 2024;2763:79-97. doi: 10.1007/978-1-0716-3670-1_7
• Sugiura, T; Kameyama, A.
  Preparation of Soluble Mucin Solutions from the Salivary Glands.
  METHODS MOL BIOL. 2024;2763:45-50. doi: 10.1007/978-1-0716-3670-1_3
• Hasegawa, T; Nakagawara, A; Takagi, T; Shimoaka, T; Shioya, N; Sonoyama, M.
  Phonon modes controlled by primary chemical structure of partially fluorinated dimyristoylphosphatidylcholine (DMPC) revealed by multiple-angle incidence resolution spectrometry (MAIRS).
  J CHEM PHYS. 2024 Feb 14;160(6):064704. doi: 10.1063/5.0190441
• Niibori-Nambu, A; Yamasaki, Y; Kobayashi, D; Angata, K; Kuno, A; Panawan, O; Silsilivanit, A; Narimatsu, H; Araki, N.
  Chondroitin sulfate modification of CSPG4 regulates the maintenance and differentiation of glioma initiating cells via integrin-associated signaling.
  J BIOL CHEM. 2024 Feb 1:105706. doi: 10.1016/j.jbc.2024.105706
• Bekker, GJ; Fukunishi, Y; Higo, J; Kamiya, N.
  Binding Mechanism of Riboswitch to Natural Ligand Elucidated by McMD-Based Dynamic Docking Simulations.
  ACS OMEGA. 2024 Jan 10;9(3):3412-3422. doi: 10.1021/acsomega.3c06826 eCollection
• Sato, T; Oishi, K.
  Time-restricted feeding has a limited effect on hepatic lipid accumulation, inflammation and fibrosis in a choline-deficient high-fat diet-induced murine NASH model.
  PLOS ONE. 2024 Jan 29;19(1):e0296950. doi: 10.1371/journal.pone.0296950
• Kumar, V; Sari, AN; Gupta, D; Ishida, Y; Terao, K; Kaul, SC; Vrati, S; Sundar, D; Wadhwa, R.
  Anti-COVID-19 Potential of Withaferin-A and Caffeic Acid Phenethyl Ester.
  CURR TOP MED CHEM. 2024 Jan 24. doi: 10.2174/0115680266280720231221100004
• Chen, LM; Keisham, S; Tateno, H; van, Ede J; Pronk, M; van, Loosdrecht MCM; Lin, Y.
  Alterations of Glycan Composition in Aerobic Granular Sludge during the Adaptation to Seawater Conditions.
  ACS ES T WATER. 2023 Dec 27;4(1):279-286. doi: 10.1021/acsestwater.3c00625
• Kishimoto, T; Nishimura, K; Morishita, K; Fukuda, A; Miyamae, Y; Kumagai, Y; Sumaru, K; Nakanishi, M; Hisatake, K; Sano, M.
  An engineered ligand-responsive Csy4 endoribonuclease controls transgene expression from Sendai virus vectors.
  J BIOL ENG. 2024 Jan 16;18(1):9. doi: 10.1186/s13036-024-00404-9
• Hashimoto, T; Suenaga, H; Amagai, K; Hashimoto, J; Kozone, I; Takahashi, S; Shin-Ya, K.
  In Vitro Module Editing Of NRPS Enables Production Of Highly Potent Gq-Signaling Inhibitor FR900359 Derived From Unculturable Plant Symbiont.
  ANGEW CHEM INT ED ENGL. 2024 Jan 18:e202317805. doi: 10.1002/anie.202317805
• Germany, EM; Thewasano, N; Imai, K; Maruno, Y; Bamert, RS; Stubenrauch, CJ; Dunstan, RA; Ding, Y; Nakajima, Y; Lai, X; Webb, CT; Hidaka, K; Tan, KS; Shen, H; Lithgow, T; Shiota, T.
  Dual recognition of multiple signals in bacterial outer membrane proteins enhances assembly and maintains membrane integrity.
  ELIFE. 2024 Jan 16;12:RP90274. doi: 10.7554/eLife.90274
• Shimizu, R; Murai, K; Tanaka, K; Sato, Y; Takeda, N; Nakasyo, S; Shirasaki, T; Kawaguchi, K; Shimakami, T; Nio, K; Nakaya, Y; Kagiwada, H Horimoto, K; Mizokami, M; Kaneko, S; Murata, K; Yamashita, T; Honda, M.
  Nucleos(t)ide analogs for hepatitis B virus infection differentially regulate the growth factor signaling in hepatocytes.
  HEPATOL COMMUN. 2024 Jan 5;8(1):e0351. doi: 10.1097/HC9.0000000000000351
• Zhang, Y; Yang, W; Kumagai, YLoza, M; Zhang, W; Park, SJ; Nakai, K.
  Multi-omics computational analysis unveils the involvement of AP-1 and CTCF in hysteresis of chromatin states during macrophage polarization.
  FRONT IMMUNOL. 2023 Dec 20;14:1304778. doi: 10.3389/fimmu.2023.1304778
• Keisham, S; Saito, S; Kowashi, S; Tateno, H.
  Droplet-Based Glycan and RNA Sequencing for Profiling the Distinct Cellular Glyco-States in Single Cells.
  SMALL METHODS. 2024 Jan 2:e2301338. doi: 10.1002/smtd.202301338
• Song, X; Nihashi, Y; amamoto, M; Setoyama, D; Kunisaki, Y; Kida, YS.
  Exploring the Role of Desmoplastic Physical Stroma in Pancreatic Cancer Progression Using a Three-Dimensional Collagen Matrix Model.
  BIOENGINEERING (Basel). 2023 Dec 18;10(12):1437. doi: 10.3390/bioengineering10121437
• Kumar, V; Meidinna, HN; Kaul, SC; Gupta, D; Ishida, Y; Terao, K; Vrati, S; Sundar, D; Wadhwa, R.
  Molecular insights to the anti-COVID-19 potential of α-, β- and γ-cyclodextrins.
  J BIOMOL STRUCT DYN. 2023 Dec 20:1-11. doi: 10.1080/07391102.2023.2294385
• Fukuda, I; Moritsugu, K; Higo, J; Fukunishi, Y.
  A cutoff-based method with charge-distribution-data driven pair potentials for efficiently estimating electrostatic interactions in molecular systems.
  J CHEM PHYS. 2023 Dec 21;159(23):234116. doi: 10.1063/5.0172270
• Watanabe, Y; Iwasaki, Y; Sasaki, K; Motono, C; Imai, K; Suzuki, K.
  Atg15 is a vacuolar phospholipase that disintegrates organelle membranes.
  CELL REP. 2023 Dec 15:113567. doi: 10.1016/j.celrep.2023.113567
• Miyazaki, M; Arisaka, C; Nakagawara, A; Sasaki, N; Takahashi, H; Takagi, T; Amii, H; Sonoyama, M.
  Thermodynamic study on hydrated bilayers of ether-linked phosphatidylcholines with terminal perfluorobutyl group.
  BIOCHIM BIOPHYS ACTA BIOMEMBR. 2023 Dec 13:184261. doi: 10.1016/j.bbamem.2023.184261
• Sato, T; Ochiishi, T; Higo-Yamamoto, S; Oishi, K.
  Circadian and sleep phenotypes in a mouse model of Alzheimers disease characterized by intracellular accumulation of amyloid β oligomers.
  EXP ANIM. 2023 Dec 14. doi: 10.1538/expanim.23-0104
• Zhang, HY; Zhang, ZY; Kaul, SC; Wadhawa, R.
  Antistress activity of some phytochemicals: screening, identification, validation, and potential applications.
  ANNALS OF NUTRITION AND METABOLISM. 2023;79 (suppl 1) 1087-1087; AUG. doi: 10.1159/000530786
• Yonezawa, A; Mizushima, K; Hirai, Y; Tateno, H; Muto, A; Igarashi, K; Takag, T; Naito, Y; Higashimura, Y.
  Involvement of transcription repressor Bach1 in function of intestinal goblet cells.
  ANNALS OF NUTRITION AND METABOLISM. 2023;79 (suppl 1) 1170-1170; AUG. doi: 10.1159/000530786
• Akagi, Y; Takayama, Y; Nihashi, Y; Yamashita, A; Yoshida, R; Miyamoto, Y; Kida, YS.
  Functional engineering of human iPSC-derived parasympathetic neurons enhances responsiveness to gastrointestinal hormones.
  FEBS OPEN BIO. 2023 Nov 27. doi: 10.1002/2211-5463.13741
• Maeda, F; Adachi, S; Natsume, T.
  Non-destructive and efficient method for obtaining miRNA information in cells by artificial extracellular vesicles.
  SCI REP. 2023 Dec 14;13(1):22231. doi: 10.1038/s41598-023-48995-5
• Adler, A; Fritsch, M; Fromell, K; Leneweit, G; Ekdahl, KN; Nilsson, B; Teramura, Y.
  Regulation of the innate immune system by fragmented heparin-conjugated lipids on lipid bilayered membranes in vitro.
  J MATER CHEM B. 2023 Nov 13. doi: 10.1039/d3tb01721d
• Viswan, A; Yoshikawa, C; Yamagishi, A; Furuhata, Y; Kato, Y; Yamazaki, T; Nakamura, C.
  Efficient genome editing by controlled release of Cas9 ribonucleoprotein in plant cytosol using polymer-modified microneedle array.
  BIOCHEM BIOPHYS RES COMMUN. 2023 Oct 29;686:149179. doi: 10.1016/j.bbrc.2023.149179
• Suzuki, S; Saito, S; Narushima, Y; Kodani, S; Kagaya, N; Suenaga, H; Shin-Ya, K; Arai, MA.
  Notch activator cyclopiazonic acid induces apoptosis in HL-60 cells through calcineurin activation.
  J ANTIBIOT (Tokyo). 2023 Nov 8. doi: 10.1038/s41429-023-00673-4
• Takakuwa, H; Yamazaki, T; Souquere, S; Adachi, S; Yoshino, H; Fujiwara, N; Yamamoto, T; Natsume, T; Nakagawa, S; Pierron, G; Hirose, T.
  Shell protein composition specified by the lncRNA NEAT1 domains dictates the formation of paraspeckles as distinct membraneless organelles.
  NAT CELL BIOL. 2023 Nov 6. doi: 10.1038/s41556-023-01254-1
• Ishii, N; Noguchi, K; Ikemoto, MJ; Yohda, M; Odahara, T.
  Optimizing Exosome Preparation Based on Size and Morphology: Insights From Electron Microscopy.
  MICROSC MICROANAL. 2023 Oct 13:ozad103. doi: 10.1093/micmic/ozad103
• Ishii, N; Odahara, T.
  Investigation of the Efficacy of Lanthanoid Heavy Metal Acetates as Electron Staining Reagents for Biomembrane Vesicles.
  MICROSC MICROANAL. 2023 Oct 13:ozad107. doi: 10.1093/micmic/ozad107
• Takeda, N; Tsuchiya, A; Mito, M; Natsui, K; Natusi, Y; Koseki, Y; Tomiyoshi, K; Yamazaki, F; Yoshida, Y; Abe, H; Sano, M; Kido, T; Yoshioka, Y; Kikuta, J; Itoh, T; Nishimura, K; Ishii, M; Ochiya, T; Miyajima, A; Terai, S.
  Analysis of distribution, collection, and confirmation of capacity dependency of small extracellular vesicles toward a therapy for liver cirrhosis.
  INFLAMM REGEN. 2023 Oct 9;43(1):48. doi: 10.1186/s41232-023-00299-x
• Ishioka, M; Nihashi, Y; Sunagawa, Y; Umezawa, K; Shimosato, T; Kagami, H; Morimoto, T; Takaya, T.
  Myogenetic Oligodeoxynucleotide Induces Myocardial Differentiation of Murine Pluripotent Stem Cells.
  INT J MOL SCI. 2023 Sep 21;24(18):14380. doi: 10.3390/ijms241814380
• Miyazawa, K; Penedo, M; Furusho, H; Ichikawa, T; Alam, MS; Miyata, K; Nakamura, C; Fukuma, T.
  Nanoendoscopy-AFM for Visualizing Intracellular Nanostructures of Living Cells.
  MICROSC MICROANAL. 2023 Jul 22;29(Supplement_1):782. doi: 10.1093/micmic/ozad067.387
• Shimazaki, H; Nakamura, K; Ono, A; Segawa, O; Sawakami, K; Koizuka, M; Hirayama, M; Hori, K; Tajima, H; Kuno, A.
  Auto-Lectin Dotcoding by Two Octopuses: Rapid Analysis of Fluorescence-Labeled Glycoproteins by an 8-channel Fully-Automatic Bead Array Scanner with a Rolling-Circle Detector.
  ANAL CHEM. 2023 Aug 3. doi: 10.1021/acs.analchem.3c01395
• Takubo, K; Htun, PW; Ueda, T; Sera, Y; Iwasaki, M; Koizumi, M; Shiroshita, K; Kobayashi, H; Haraguchi, M; Watanuki, S; Honda, ZI; Yamasaki, N; Nakamura-Ishizu, A; Arai, F; Motoyama, N; Hatta, T; Natsume, T; Suda, T; Honda, H.
  MBTD1 preserves adult hematopoietic stem cell pool size and function.
  PROC NATL ACAD SCI U S A. 2023 Aug 8;120(32):e2206860120. doi: 10.1073/pnas.2206860120
• Odaka, H.
  Target-Specific O-linked N-acetylglucosamine Modification with a Dual-Specificity Aptamer Reveals Functions of O-GlcNAcylation in beta-catenin.
  TRENDS IN GLYCOSCIENCE AND GLYCOTECHNOLOGY. May 25, 2023; Volume 35(2023) Issue 205. doi: 10.4052/tigg.2309.6E
• Ichikawa, T; Alam, MS; Penedo, M; Matsumoto, K; Fujita, S; Miyazawa, K; Furusho, H; Miyata, K; Nakamura, C; Fukuma, T.
  Protocol for live imaging of intracellular nanoscale structures using atomic force microscopy with nanoneedle probes.
  STAR PROTOC. 2023 Jul 22;4(3):102468. doi: 10.1016/j.xpro.2023.102468
• Kumar, V; Dhanjal, JK; Sari, AN; Khurana, M; Kaul, SC; Wadhwa, R; Sundar, D.
  Effect of Withaferin-A, Withanone, and Caffeic Acid Phenethyl Ester on DNA Methyltransferases: Potential in Epigenetic Cancer Therapy.
  CURR TOP MED CHEM. 2023 Jul 26. doi: 10.2174/1568026623666230726105017
• Boottanun, P; Nagai-Okatani, C; Nagai, M; Ungkulpasvich, U; Yamane, S; Yamada, M; Kuno, A.
  An improved evanescent fluorescence scanner suitable for high-resolution glycome mapping of formalin-fixed paraffin-embedded tissue sections.
  ANALYTICAL AND BIOANALYTICAL CHEMISTRY. 2023 JUL 3. doi: 10.1007/s00216-023-04824-2
• Miyashita, K; Yagi, T; Kagaya, N; Takechi, A; Nakata, C; Kanda, R; Nuriya, H; Tanegashima, K; Hoyano, S; Seki, F; Yoshida, C; Hachiro, Y; Higashi, T; Kitada, N; Toya, T; Kobayashi, T; Najima, Y; Goyama, S; Maki, SA; Kitamura, T; Doki, N; Shin-Ya, K; Hara, T.
  Identification of compounds that preferentially suppress the growth of T-cell acute lymphoblastic leukemia-derived cells.
  CANCER SCI. 2023 Jul 31. doi: 10.1111/cas.15918
• Nihashi, Y, Song, X; Yamamoto, M; Setoyama, D; Kida, YS.
  Decoding Metabolic Symbiosis between Pancreatic Cancer Cells and Cancer-Associated Fibroblasts Using Cultured Tumor Microenvironment.
  INT J MOL SCI. 2023 Jul 3;24(13):11015. doi: 10.3390/ijms241311015
• Tanaka, S; Sakaue, H, Koiwai, T; Okuda, N; Okuyama, K; Horioka, Y; Hiramatsu, Y; Kawashima, M; Ishiguro, N; Sato, T.
  Near-infrared radiation causes sebaceous gland enlargement along with an ROS-dependent augmentation of epidermal growth factor receptor expression in hamsters.
  EXPERIMENTAL DERMATOLOGY. 2023 JUL 4. doi: 10.1111/exd.14878
• Fuseya, S; Izumi, H; Hamano, A; Murakami, Y; Suzuki, R; Koiwai, R; Hayashi, T; Kuno, A, Takahashi, S; Kudo, T.
  Reduction in disialyl-T antigen levels in mice deficient for both St6galnac3 and St6galnac4 results in blood filling of lymph nodes.
  SCI REP. 2023 Jun 29;13(1):10582. doi: 10.1038/s41598-023-37363-y
• Taniguchi, M; Okumura, R; Matsuzaki, T; Nakatani, A; Sakaki, K; Okamoto, S; Ishibashi, A; Tani, H; Horikiri, M; Kobayashi, N; Yoshikawa, HY; Motooka, D; Okuzaki, D; Nakamura, S; Kida, T; Kameyama, A, Takeda, K.
  Sialylation shapes mucus architecture inhibiting bacterial invasion in the colon.
  MUCOSAL IMMUNOL. 2023 Jun 27:S1933-0219(23)00049-1. doi: 10.1016/j.mucimm.2023.06.004
• Roberts, MD; McCarthy, JJ; Hornberger, TA; Phillips, SM; Mackey, AL; Nader, GA; Boppart, MD; Kavazis, AN; Reidy, PT; Ogasawara, R, Libardi, CA; Ugrinowitsch, C; Booth, FW; Esser, KA.
  Mechanisms of mechanical overload-induced skeletal muscle hypertrophy: current understanding and future directions.
  PHYSIOL REV. 2023 Jun 29. doi: 10.1152/physrev.00039.2022
• Fujihara, H; Hirose, J; Suenaga, H.
  Evolution of genetic architecture and gene regulation in biphenyl/PCB-degrading bacteria.
  FRONTIERS IN MICROBIOLOGY. 2023 Jun 7;14:1168246. doi: 10.3389/fmicb.2023.1168246
• Tsuyukubo, A; Morishita, K; Kanamori, T; Sumaru, K.
  Construction of a spheroid array culture system on a suspended permeable hydrogel membrane scaffold for improving the expression of a liver-specific drug-metabolizing enzyme of HepG2 cells.
  BIOMATER SCI. 2023 Jun 22. doi: 10.1039/d3bm00071k
• Ohkawa, M; Konno, M.
  RNA Modification Related Diseases and Sensing Methods.
  APPLIED SCIENCES-BASEL. 2023 13(11) 6376. doi: 10.3390/app13116376
• Zhuang, HT; Fujikura, Y, Ohkura, N; Higo-Yamamoto, S; Mishima, T; Oishi, K.
  A ketogenic diet containing medium-chain triglycerides reduces REM sleep duration without significant influence on mouse circadian phenotypes.
  FOOD RESEARCH INTERNATIONAL. 2023 Jul;169:112852. doi: 10.1016/j.foodres.2023.112852
• Kalra, RS; Chaudhary, A; Omar, A; Li, X; Khurana, M; Kaul, SC, Wadhwa, R.
  Stress-induced changes in CARF expression serve as a quantitative predictive measure of cell proliferation fate.
  EXP CELL RES. 2023 Jun 3:113669. doi: 10.1016/j.yexcr.2023.113669
• Watanabe, T, Tateno, H.
  Lectin Blotting of Cell Lysates.
  CURR PROTOC. 2023 May;3(5):e790. doi: 10.1002/cpz1.790
• Takayama, Y, Akagi, Y, Kida, YS.
  Deciphering the Molecular Mechanisms of Autonomic Nervous System Neuron Induction through Integrative Bioinformatics Analysis.
  INT J MOL SCI. 2023 May 21;24(10):9053. doi: 10.3390/ijms24109053
• Abe, T, Sato, T, Murotomi, K.
  Sudachitin and Nobiletin Stimulate Lipolysis via Activation of the cAMP/PKA/HSL Pathway in 3T3-L1 Adipocytes.
  FOODS. 2023 May 10;12(10):1947. doi: 10.3390/foods12101947
• Kuroda, Y; Oda, T; Shimomura, O; Louphrasitthiphol, P; Mathis, BJ; Tateno, H, Hatano, K.
  Novel positron emission tomography imaging targeting cell surface glycans for pancreatic cancer: (18) F-labeled rBC2LCN lectin.
  CANCER SCI. 2023 May 19. doi: 10.1111/cas.15846
• Sugiyama, JI; Tokunaga, Y; Hishida, M; Tanaka, M; Takeuchi, K; Satoh, D; Imashimizu, M.
  Nonthermal acceleration of protein hydration by sub-terahertz irradiation.
  NAT COMMUN. 2023 May 22;14(1):2825. doi: 10.1038/s41467-023-38462-0
• Odaka, H; Tateno, H.
  Single-Cell Glycan and RNA Sequencing (scGR-seq).
  CURR PROTOC. 2023 May;3(5):e777. doi: 10.1002/cpz1.777
• Arima, K; Akiyama, S; Shin-Ya, K; Matsuda, K; Wakimoto, T.
  Carrier Protein Mediated Formation of the Dihydropyridazinone Ring in Actinopyridazinone Biosynthesis.
  ANGEW CHEM INT ED ENGL. 2023 May 17:e202305155. doi: 10.1002/anie.202305155
• Huifu, H; Shefrin, S; Yang, S; Zhang, Z; Kaul, SC; Sundar, D; Wadhwa, R.
  Cucurbitacin-B inhibits cancer cell migration by targeting mortalin and HDM2: computational and in vitro experimental evidence.
  J BIOMOL STRUCT DYN. 2023 May 2:1-10. doi: 10.1080/07391102.2023.2206914
• Nakagawa, Y; Hishida, T; Sumaru, K; Morishita, K; Kirito, K; Yokojima, S; Sakamoto, Y; Nakamura, S; Uchida, K.
  Phototunable Cell Killing by Photochromic Diarylethene of Thiazoyl and Thienyl Derivatives.
  JOURNAL OF MEDICINAL CHEMISTRY. 2023, 66 (8) 5937-5949. doi: 10.1021/acs.jmedchem.3c00164
• Kumagai, Y; Saito, Y; Kida, YS.
  A multiomics atlas of brown adipose tissue development over time.
  ENDOCRINOLOGY. 2023 Apr 21:bqad064. doi: 10.1210/endocr/bqad064
• Zhang, H; Wang, J; Prakash, J; Zhang, Z; Kaul, SC; Wadhwa, R.
  Three-way Cell-based Screening of Antistress Compounds: Identification, Validation, and Relevance to Old-age Related Pathologies.
  J GERONTOL A BIOL SCI MED SCI. 2023 Apr 15:glad103. doi: 10.1093/gerona/glad103
• Sugiura, T; Hashimoto, K; Kikuta, K; Anazawa, U; Nomura, T; Kameyama, A.
  Expression and localisation of MUC1 modified with sialylated core-2 O-glycans in mucoepidermoid carcinoma.
  SCI REP. 2023 Apr 8;13(1):5752. doi: 10.1038/s41598-023-32597-2
• Ikemoto, MJ; Aihara, Y; Ishii, N; Shigemori, H.
  3,4-Dihydroxybenzalacetone Inhibits the Propagation of Hydrogen Peroxide-Induced Oxidative Effect via Secretory Components from SH-SY5Y Cells.
  BIOL PHARM BULL. 2023;46(4):599-607. doi: 10.1248/bpb.b22-00727

2022年

• Sugiura, S; Yamahira, S; Tamura, M; Shin, K; Shibuta, M; Satoh, T; Matsuzawa, Y; Fujii, G; Yanagawa, F; Mutoh, M; Yanagisawa, M; Kato, R; Matsui, H.
  Automated cell isolation from photodegradable hydrogel based on fluorescence image analysis.
  BIOTECHNOL BIOENG. 2023 Mar 15. doi: 10.1002/bit.28375
• Murata, Y; Jitsukawa, T; Iida, M; Furuta, T; Haramoto, Y; Shigeri, Y; Fujisaki, S.
  Liquid chromatography-mass spectrometry analyses of polyprenyl phosphates in Escherichia coli cells in which genes for isoprenoid synthesis are amplified.
  J BIOSCI BIOENG. 2023 Mar 1:S1389-1723(23)00047-6. doi: 10.1016/j.jbiosc.2023.02.003
• Shin, WH; Kumazawa, K; Imai, K; Hirokawa, T; Kihara, D.
  Quantitative comparison of protein-protein interaction interface using physicochemical feature-based descriptors of surface patches.
  FRONT MOL BIOSCI. 2023 Feb 6;10:1110567. doi: 10.3389/fmolb.2023.1110567
• Mawaribuchi, S; Ito, M; Ogata, M; Yoshimura, Y; Miura, I.
  Parallel Evolution of Sex-Linked Genes across XX/XY and ZZ/ZW Sex Chromosome Systems in the Frog Glandirana rugosa.
  GENES (Basel). 2023 Jan 18;14(2):257. doi: 10.3390/genes14020257
• Rangasami, VK; Asawa, K; Teramura, Y; Le, Blanc K; Nilsson, B; Hilborn, J; Varghese, OP; Oommen, OP.
  Biomimetic polyelectrolyte coating of stem cells suppresses thrombotic activation and enhances its survival and function.
  BIOMATER ADV. 2023 Feb 8;147:213331. doi: 10.1016/j.bioadv.2023.213331
• Sogo, T; Nakao, S; Tsukamoto, T; Ueyama, T; Harada, Y; Ihara, D; Ishida, T; Nakahara, M; Hasegawa, K; Akagi, Y; Kida, YS; Nakagawa, O; Nagamune, T; Kawahara, M; Kawamura, T.
  Canonical Wnt signaling activation by chimeric antigen receptors for efficient cardiac differentiation from mouse embryonic stem cells.
  INFLAMM REGEN. 2023 Feb 10;43(1):11. doi: 10.1186/s41232-023-00258-6
• Kumar, V; Sari, AN; Meidinna, HN; Kaul, A; Basu, B; Ishida, Y; Terao, K; Kaul, SC; Vrati, S; Sundar, D; Wadhwa, R.
  Computational and experimental evidence of the anti-COVID-19 potential of honeybee propolis ingredients, caffeic acid phenethyl ester and artepillin c.
  PHYTOTHER RES. 2023 Feb 9. doi: 10.1002/ptr.7717
• Sato, Y; Kato, Y; Iizumi, Y; Morimoto, T; Kobashi, K; Sugino, T; Tateno, H; Okazaki, T.
  Size distributions of cellulose nanocrystals in dispersions using the centrifugal sedimentation method.
  INT J BIOL MACROMOL. 2023 Feb 2:123520. doi: 10.1016/j.ijbiomac.2023.123520
• Mawaribuchi, S; Shimomura, O; Oda, T; Hiemori, K; Shimizu, K; Yamase, K; Date, M; Tateno, H.
  rBC2LCN-reactive SERPINA3 is a glycobiomarker candidate for pancreatic ductal adenocarcinoma.
  GLYCOBIOLOGY. 2023 Feb 2:cwad009. doi: 10.1093/glycob/cwad009
• Matsuda, KM; Kotani, H; Yamaguchi, K; Okumura, T; Fukuda, E; Kono, M; Hisamoto, T; Kawanabe, R; Norimatsu, Y; Kuzumi, A; Fukayama, M; Fukasawa, T; Ebata, S; Yoshizaki-Ogawa, A; Okamura, T; Shoda, H; Fujio, K; Goshima, N; Sato, S; Yoshizaki, A.
  Significance of anti-transcobalamin receptor antibodies in cutaneous arteritis revealed by proteome-wide autoantibody screening.
  J AUTOIMMUN. 2023 Jan 30;135:102995. doi: 10.1016/j.jaut.2023.102995
• Itakura, Y; Hasegawa, Y; Kikkawa, Y; Murakami, Y; Sugiura, K; Nagai-Okatani, C; Sasaki, N; Umemura, M; Takahashi, Y; Kimura, T; Kuno, A; Ishiwata, T; Toyoda, M.
  Spatiotemporal changes of tissue glycans depending on localization in cardiac aging.
  REGEN THER. 2023 Jan 7;22:68-78. doi: 10.1016/j.reth.2022.12.009
• Huang, T; Sato, Y; Kuramochi, A; Ohba, Y; Sano, M; Miyagishi, M; Tateno, H; Wadhwa, R; Kawasaki, K; Uchida, T; Ekdahl, KN; Nilsson, B; Chung, UI; Teramura, Y.
  Surface modulation of extracellular vesicles with cell-penetrating peptide-conjugated lipids for improvement of intracellular delivery to endothelial cells.
  REGEN THER. 2023 Jan 11;22:90-98. doi: 10.1016/j.reth.2022.12.007
• Tsuda, M; Nakatani, Y; Baba, S; Tanaka, I; Ichikawa, K; Nonaka, K; Ito, R; Yoko-O, T; Chiba, Y.
  Selection of the methylotrophic yeast Ogataea minuta as a high-producing host for heterologous protein expression.
  J BIOSCI BIOENG. 2023 Jan 24:S1389-1723(22)00375-9. doi: 10.1016/j.jbiosc.2022.12.006
• Yu, Y; Zhang, GX; Li, ZP; Wang, J; Liu, Y; Bhardwaj, R; Wadhwa, R; Nagao, Y; Shichiri, M; Gao, R.
  Designed fabrication of active tumor targeting covalent organic framework nanotherapeutics via a simple post-synthetic strategy.
  NANO RESEARCH. 03 January 2023. doi: 10.1007/s12274-022-5265-7
• Ato, S; Matsunami, H;Ogasawara, R.
  Aging is associated with impaired postprandial response of skeletal muscle protein synthesis to high-intensity muscle contraction in mice.
  J GERONTOL A BIOL SCI MED SCI. 2023 Jan 12:glad014. doi: 10.1093/gerona/glad014
• Mawaribuchi, S; Haramoto, Y; Ikeda, N; Ito, M.
  Evolutionary features of ligands and their receptors via protein-protein interactions and essentiality in primates.
  GENES CELLS. 2023 Jan 9. doi: 10.1111/gtc.13006
• Kudo, F; Kishikawa, K; Tsuboi, K; Kido, T; Usui, T; Hashimoto, J; Shin-Ya, K; Miyanaga, A; Eguchi, T.
  Acyltransferase Domain Exchange between Two Independent Type I Polyketide Synthases in the Same Producer Strain of Macrolide Antibiotics.
  CHEMBIOCHEM. 2023 Jan 5. doi: 10.1002/cbic.202200670
• Takeda, H; Busto, JV; Lindau, C; Tsutsumi, A; Tomii, K; Imai, K; Yamamori, Y; Hirokawa, T; Motono, C; Ganesan, I; Wenz, LS; Becker, T; Kikkawa, M; Pfanner, N; Wiedemann, N; Endo, T.
  A multipoint guidance mechanism for β-barrel folding on the SAM complex.
  NAT STRUCT MOL BIOL. 2023 Jan 5. doi: 10.1038/s41594-022-00897-2
• Limjanthong, N; Tohbaru, Y; Okamoto, T; Okajima, R; Kusama, Y; Kojima, H; Fujimura, A; Miyazaki, T; Kanamori, T; Sugiura, S; Ohnuma, K.
  Gravity-driven microfluidic device placed on a slow-tilting table enables constant unidirectional perfusion culture of human induced pluripotent stem cells.
  J BIOSCI BIOENG. 2022 Dec 29:S1389-1723(22)00346-2. doi: 10.1016/j.jbiosc.2022.11.007
• Ishii, N.
  C-shaped dipper: A novel useful auxiliary tool for preparation of specimen grids for transmission electron microscopy.
  MICROSC RES TECH. 2022 Dec 29. doi: 10.1002/jemt.24283
• Hayashida, R; Kikuchi, R; Imai, K; Kojima, W; Yamada, T; Iijima, M; Sesaki, H; Tanaka, K; Matsuda, N; Yamano, K.
  Elucidation of ubiquitin-conjugating enzymes that interact with RBR-type ubiquitin ligases using a liquid-liquid phase separation-based method.
  J BIOL CHEM. 2022 Dec 20:102822. doi: 10.1016/j.jbc.2022.102822
• Murotomi, K; Kagiwada, H; Hirano, K; Yamamoto, S; Numata, N; Matsumoto, Y; Kaneko, H; Namihira, M.
  Cyclo-glycylproline attenuates hydrogen peroxide-induced cellular damage mediated by the MDM2-p53 pathway in human neural stem cells.
  J CELL PHYSIOL. 2022 Dec 31. doi: 10.1002/jcp.30940
• Ishimura, R; El-Gowily, AH; Noshiro, D; Komatsu-Hirota, S; Ono, Y; Shindo, M; Hatta, T; Abe, M; Uemura, T; Lee-Okada, HC; TMohamed, TM; Yokomizo, T; Ueno, T; Sakimura, K; Natsume, T; Sorimachi, H; Inada, T; Waguri, S; Noda, NN; Komatsu, M.
  The UFM1 system regulates ER-phagy through the ufmylation of CYB5R3.
  NAT COMMUN. 2022 Dec 21;13(1):7857. doi: 10.1038/s41467-022-35501-0
• Ando, M; Kawasaki, H; Tamura, S; Haramoto, Y; Shigeri, Y.
  Recent Advances in Gas Sensing Technology Using Non-Oxide II-VI Semiconductors CdS, CdSe, and CdTe.
  CHEMOSENSORS. 2022 10(11)482. doi: 10.3390/chemosensors10110482
• Suzuki, H; Adler, A; Huang, T; Kuramochi, A; Ohba, Y; Sato, Y; Nakamura, N; Manivel, VA; Ekdahl, KN; Nilsson, B; Ishihara, K; Teramura, Y.
  Impact of spontaneous liposome modification with phospholipid polymer-lipid conjugates on protein interactions.
  SCI TECHNOL ADV MATER. 2022 Dec 8;23(1):845-857. doi: 10.1080/14686996.2022.2146466
• Zou, X; Lu, J; Deng, Y; Liu, Q; Yan, X; Cui, Y; Xiao, X; Fang, M; Yang, F; Sawaki, H; Sato, T; Tan, B; Lu, X; Feng, B; Kuno, A; Narimatsu, H; Gao, C; Zhang, Y.
  ST6GAL1 inhibits metastasis of hepatocellular carcinoma via modulating sialylation of MCAM on cell surface.
  ONCOGENE. 2022 Dec 17. doi: 10.1038/s41388-022-02571-9
• Yoshida, Y; Yajima, Y; Fujikura, Y; Zhuang, H; Higo-Yamamoto, S; Toyoda, A; Oishi, K.
  Identification of salivary microRNA profiles in male mouse model of chronic sleep disorder.
  Stress. 2022;26(1):21-28. doi: 10.1080/10253890.2022.2156783
• Yoshida, Y; Yajima, Y; Kawakami, K; Nakamura, S; Tsukahara, T; Oishi, K; Toyoda, A.
  Salivary microRNA and metabolic profiles in a mouse model of subchronic and mild social defeat stress.
  Int J Mol Sci. 2022;23:14479. doi: 10.3390/ijms232214479
• Horikawa, K; Hashimoto, C; Kikuchi, Y; Makita, M; Oishi, K.
  Wheat alkylresorcinol increases fecal lipid excretion and suppresses feed efficiency in mice depending on the time of supplementation.
  Nutrition. 2022;103-104:111796. doi: 10.1016/j.nut.2022.111796
• Ohkura, N; Taniguchi, M; Oishi, K; Inoue, K; Ohta, M.
  Angelica keiskei (Ashitaba) has potential as an antithrombotic health food.
  Food Res. 2022;6(2):18-24. doi: 10.26656/fr.2017.6(2).121
• Abe, T.
  Timing of Medium-Chain Triglyceride Consumption Modulates Effects in Mice with Obesity Induced by a High-Fat High-Sucrose Diet.
  NUTRIENTS. 2022 Dec 1;14(23):5096. doi: 10.3390/nu14235096
• Nagashima, I; Sugiyama, JI; Shimizu, H.
  Study of 400 MHz microwave conduction loss effect for a hydrolysis reaction by thermostable β-Glucosidase HT1.
  BIOSCI BIOTECHNOL BIOCHEM. 2022 Dec 6:zbac194. doi: 10.1093/bbb/zbac194
• Kuroda, Y; Shimomura, O; Nakahashi, H; Miyazaki, Y; Nakajima, T; Tateno, H; Oda, T.
  Lectin-based photoimmunotherapy targeting cell surface glycans for pancreatic cancer.
  CANCER RESEARCH 82 (22). 2022 NOV 15. doi: 10.1158/1538-7445.PANCA22-B083
• Haji, S; Ito, T; Guenther, C; Nakano, M; Shimizu, T; Mori, D; Chiba, Y; Tanaka, M; Mishra, SK; Willment, JA; Brown, GD; Nagae, M; Yamasaki, S.
  Human Dectin-1 is O-glycosylated and serves as a ligand for C-type lectin receptor CLEC-2.
  ELIFE. 2022 Dec 8;11:e83037. doi: 10.7554/eLife.83037
• Fukunishi, Y; Higo, J; Kasahara, K.
  Computer simulation of molecular recognition in biomolecular system: from in silico screening to generalized ensembles.
  BIOPHYS REV. 2022 Nov 28:1-25. doi: 10.1007/s12551-022-01015-8
• Kudo, F; Minato, A; Sato, S; Nagano, N; Maruyama, C; Hamano, Y; Hashimoto, J; Kozone, I; Shin-Ya; Eguchi, T.
  Mechanism of S-Adenosyl-l-methionine C-Methylation by Cobalamin-dependent Radical S-Adenosyl-l-methionine Methylase in 1-Amino-2-methylcyclopropanecarboxylic Acid Biosynthesis.
  ORG LETT. 2022 Dec 2. doi: 10.1021/acs.orglett.2c03555
• Kato, K; Okazaki, S; Schmitt-Ulms, C; Jiang, K; Zhou, W; Ishikawa, J; Isayama, Y; Adachi, S; Nishizawa, T; Makarova, KS; Koonin, EV; Abudayyeh, OO; Gootenberg, JS; Nishimasu, H.
  RNA-triggered protein cleavage and cell growth arrest by the type III-E CRISPR nuclease-protease.
  SCIENCE. 2022 Nov 25;378(6622):882-889. doi: 10.1126/science.add7347
• Sugio, Y; Yamagami, R; Shigi, N; Hori, H.
  A selective and sensitive detection system for 4-thiouridine modification in RNA.
  RNA. 2022 Nov 21:rna.079445.122. doi: 10.1261/rna.079445.122
• Fujikura, Y; Yamanouchi, K; Sugihara, H; Hatakeyama, M; Abe, T; Ato, S; Oishi, K.
  Ketogenic diet containing medium-chain triglyceride ameliorates transcriptome disruption in skeletal muscles of rat models of duchenne muscular dystrophy.
  BIOCHEM BIOPHYS REP. 2022 Nov 11;32:101378. doi: 10.1016/j.bbrep.2022.101378
• Kuroda, Y; Oda, T; Shimomura, O; Hashimoto, S; Akashi, Y; Miyazaki, Y; Furuya, K; Furuta, T; Nakahashi, H; Louphrasitthiphol, P; Mathis, BJ; Nakajima,T; Tateno, H.
  Lectin-based phototherapy targeting cell surface glycans for pancreatic cancer.
  INT J CANCER. 2022 Nov 22. doi: 10.1002/ijc.34362
• Lintuluoto, M; Abe, M; Horioka, Y; Fukunishi, Y; Tamura, H; M, Lintuluoto J.
  Investigation on substrate specificity and catalytic activity of serine protease neuropsin.
  BIOPHYS PHYSICOBIOL. 2022 Sep 22;19:e190040. doi: 10.2142/biophysico.bppb-v19.0040
• Nohira, N; Shinji, S; Nakamura, S; Nihashi, Y; Shimosato, T; Takaya, T.
  Myogenetic Oligodeoxynucleotides as Anti-Nucleolin Aptamers Inhibit the Growth of Embryonal Rhabdomyosarcoma Cells.
  BIOMEDICINES. 2022 Oct 25;10(11):2691. doi: 10.3390/biomedicines10112691
• Imai, Y;Mori, N; Nihashi, Y; Kumagai, Y; Shibuya, Y; Oshima, J; Sasaki, M; Sasaki, K; Aihara, Y; Sekido, M; Kida, YS.
  Therapeutic Potential of Adipose Stem Cell-Derived Conditioned Medium on Scar Contraction Model.
  BIOMEDICINES. 2022 Sep 24;10(10):2388. doi: 10.3390/biomedicines10102388
• Ekdahl, KN; Fromell, K; Mannes, M; Grinnemo, KH; Huber-Lang, M;Teramura, Y; Nilsson, B.
  Therapeutic regulation of complement activation in extracorporeal circuits and intravascular treatments with special reference to the alternative pathway amplification loop.
  IMMUNOL REV. 2022 Oct 18. doi: 10.1111/imr.13148
• Sano, M; Morishita, K; Onizawa, Y; Takagi, T; Sumaru, K.
  Rapid and Highly Sensitive Method for Evaluating Surface Coatings against an Enveloped RNA Virus.
  ACS APPL BIO MATER. 2022 Oct 14. doi: 10.1021/acsabm.2c00613
• Sugiura, S; Shin, K; Kanamori, T.
  Perfusion culture of endothelial cells under shear stress on microporous membrane in a pressure-driven microphysiological system.
  J BIOSCI BIOENG. 2022 Oct 14:S1389-1723(22)00258-4. doi: 10.1016/j.jbiosc.2022.09.005
• Tirta, YK; Adachi, S; Perez, CAG; Adhitama, N; Nong, QD; Natsume, T; Kato, Y; Watanabe, H.
  CELF1 represses Doublesex1 expression via its 5 UTR in the crustacean Daphnia magna.
  PLOS ONE. 2022 Oct 14;17(10):e0275526. doi: 10.1371/journal.pone.0275526
• Tasaki, M; Tateno, H; Sato, T; Narimatsu, H; Saito, K; Nakagawa, Y; Aoki, T; Kamimura, M; Ushiki, T; Takahashi, K; Tomita, Y.
  Hyporesponsiveness against donors ABO antigens of renal grafts after ABO-incompatible kidney transplantation.
  CLIN EXP NEPHROL. 2022 Oct 8. doi: 10.1007/s10157-022-02280-3
• Hiono, T; Kuno, A.
  Glycan Profiling of Viral Glycoproteins with the Lectin Microarray.
  METHODS MOL BIOL. 2022;2556:59-68. doi: 10.1007/978-1-0716-2635-1_6
• Shefrin, S; Sari, AN; Kumar, V; Zhang, H; Meidinna, HN; Kaul, SC; Wadhwa, R; Sundar, D.
  Comparative computational and experimental analyses of some natural small molecules to restore transcriptional activation function of p53 in cancer cells harbouring wild type and p53(Ser46) mutant.
  CURR RES STRUCT BIOL. 2022 Sep 13;4:320-331. doi: 10.1016/j.crstbi.2022.09.002
• Meidinna, HN; Shefrin, S; Sari, AN; Zhang, H; Dhanjal, JK; Kaul, SC; Sundar, D; Wadhwa, R.
  Identification of a new member of Mortaparib class of inhibitors that target mortalin and PARP1.
  FRONT CELL DEV BIOL. 2022 Sep 12;10:918970. doi: 10.3389/fcell.2022.918970
• Kosaka, T; Yamaguchi, S; Izuta, S; Yamahira, S; Shibasaki, Y; Tateno, H; Okamoto, A.
  Bioorthogonal Photoreactive Surfaces for Single-Cell Analysis of Intercellular Communications.
  AM CHEM SOC. 2022 Sep 20. doi: 10.1021/jacs.2c07321
• Sato, R; Suzuki, K; Yasuda, Y; Suenaga, A; Fukui, K.
  RNAapt3D: RNA aptamer 3D-structural modeling database.
  BIOPHYS J. 2022 Sep 22:S0006-3495(22)00773-1. doi: 10.1016/j.bpj.2022.09.023
• Kawai, S; Hagihara, R; Shin-Ya, K; Katsuyama, Y; Ohnishi, Y.
  Bacterial Avenalumic Acid Biosynthesis Includes Substitution of an Aromatic Amino Group for Hydride by Nitrous Acid Dependent Diazotization.
  ANGEW CHEM INT ED ENGL. 2022 Sep 17. doi: 10.1002/anie.202211728
• Teranishi, H; Tabata, K; Saeki, M; Umemoto, T; Hatta, T; Otomo, T; Yamamoto, K; Natsume, T; Yoshimori, T; Hamasaki, M.
  Identification of CUL4A-DDB1-WDFY1 as an E3 ubiquitin ligase complex involved in initiation of lysophagy.
  CELL REP. 2022 Sep 13;40(11):111349. doi: 10.1016/j.celrep.2022.111349
• Li, S; Ikeuchi, K; Kato, M; Buschauer, R; Sugiyama, T; Adachi, S; Kusano, H; Natsume, T; Berninghausen, O; Matsuo, Y; Becker, T; Beckmann, R; Inada, T.
  Sensing of individual stalled 80S ribosomes by Fap1 for nonfunctional rRNA turnover.
  MOL CELL. 2022 Sep 15;82(18):3424-3437.e8. doi: 10.1016/j.molcel.2022.08.018
• Miyazaki, K; Itoh, N; Saiki, P; Kuroki, Y.
  Supplementation with Eurycoma longifolia Extract Modulates Diurnal Body Temperature Fluctuation and Sleep Rhythm in Mice.
  J NUTR SCI VITAMINOL (Tokyo). 2022;68(4):342-347. doi: 10.3177/jnsv.68.342
• Choirunnisa, AR; Arima, K; Abe,Y; Kagaya, K; Kudo, K; Suenaga, H; Hashimoto, J; Fujie, M; Satoh, N; Shin-Ya, K; Matsuda, K; Wakimoto, T.
  New azodyrecins identified by a genome mining-directed reactivity-based screening.
  BEILSTEIN J ORG CHEM. 2022 Aug 10;18:1017-1025. doi: 10.3762/bjoc.18.102
• Yamasaki, K; Adachi, N; Ngwe Tun, MM; Ikeda, A; Moriya, T; Kawasaki, M; Yamasaki, T; Kubota, T; Nagashima, I; Shimizu, H; Tateno, H; Morita, K.
  Core fucose-specific Pholiota squarrosa lectin (PhoSL) as a potent broad-spectrum inhibitor of SARS-CoV-2 infection.
  FEBS J. 2022 Aug 25. doi: 10.1111/febs.16599
• Kagiwada, H; Motono, C; Horimoto, K; Fukui, K.
  Phosprof: pathway analysis database of drug response based on phosphorylation activity measurements.
  DATABASE (Oxford). 2022 Aug 22;2022:baac072. doi: 10.1093/database/baac072
• Higo, J; Kasahara, K; Bekker, GJ; Ma, B; Sakuraba, S; Iida, S; Kamiya, N; Fukuda, I; Kono, H; Fukunishi, Y; Nakamura, H.
  Fly casting with ligand sliding and orientational selection supporting complex formation of a GPCR and a middle sized flexible molecule.
  SCI REP. 2022 Aug 13;12(1):13792. doi: 10.1038/s41598-022-17920-7
• Sugiura, S; Satoh, T; Shin, K; Onuki-Nagasaki, R; Kanamori, T.
  Perfusion culture of multi-layered HepG2 hepatocellular carcinoma cells in a pressure-driven microphysiological system.
  J BIOSCI BIOENG. 2022 Aug 11:S1389-1723(22)00189-X. doi: 10.1016/j.jbiosc.2022.07.001
• Tomita, T; Kawano, Y; Kassai, M; Onda, H; Nakajima, Y; Miyazaki, K.
  Hydroxy-β-sanshool isolated from Zanthoxylum piperitum (Japanese pepper) shortens the period of the circadian clock.
  FOOD FUNCT. 2022 Aug 12. doi: 10.1039/d2fo01036d
• Yamagishi, A; Mizusawa, M; Uchida, K; Iijima, M; Kuroda, S; Fukazawa, K; Ishihara, K; Nakamura, C.
  Mechanical detection of interactions between proteins related to intermediate filament and transcriptional regulation in living cells.
  BIOSENS BIOELECTRON. 2022 Aug 6;216:114603. doi: 10.1016/j.bios.2022.114603
• Katsumi, T; Shams, F; Yanagi, H; Ohnishi, T; Toda, M; Lin, SM; Mawaribuchi, S; Shimizu, N; Ezaz, T; Miura, I.
  Highly rapid and diverse sex chromosome evolution in the Odorrana frog species complex.
  DEV GROWTH DIFFER. 2022 Jul 26. doi: 10.1111/dgd.12800
• Numakawa, T; Odaka, H.
  The Role of Neurotrophin Signaling in Age-Related Cognitive Decline and Cognitive Diseases.
  INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 2022 Jul 13;23(14):7726. doi: 10.3390/ijms23147726
• Kokubu, R; Ohno, S; Kuratani, H; Takahashi, Y; Manabe, N; Shimizu, H; Chiba, Y; Denda-Nagai, K; Tsuiji, M; Irimura, T; Yamaguchi, Y.
  O-Glycan-Dependent Interaction between MUC1 Glycopeptide and MY.1E12 Antibody by NMR, Molecular Dynamics and Docking Simulations.
  INT J MOL SCI. 2022 Jul 16;23(14):7855. doi: 10.3390/ijms23147855
• Iwamura, C; Hirahara, K; Kiuchi, M; Ikehara, S; Azuma, K; Shimada, T; Kuriyama, S; Ohki, S; Yamamoto, E; Inaba, Y; Shiko, Y; Aoki, A; Kokubo, K; Hirasawa, R; Hishiya, T; Tsuji, K; Nagaoka, T; Ishikawa, S; Kojima, A; Mito, H; Hase, R; Kasahara, Y; Kuriyama, N; Tsukamoto, T; Nakamura, S; Urushibara, T; Kaneda, S; Sakao, S; Tobiume, M; Suzuki, Y; Tsujiwaki, M; Kubo, T; Hasegawa, T; Nakase, H; Nishida, O; Takahashi, K; Baba, K; Iizumi, Y; Okazaki, T; Kimura, MY; Yoshino, I; Igari, H; Nakajima, H; Suzuki, T; Hanaoka, H; Nakada, TA; Ikehara, Y; Yokote, K; Nakayama, T.
  Elevated Myl9 reflects the Myl9-containing microthrombi in SARS-CoV-2-induced lung exudative vasculitis and predicts COVID-19 severity.
  PROC NATL ACAD SCI USA. 2022 Aug 16;119(33):e2203437119. doi: 10.1073/pnas.2203437119
• Yoon, AR; Wadhwa, R; Kaul, SC; Yun, CO.
  Why is Mortalin a Potential Therapeutic Target for Cancer.
  FRONT CELL DEV BIOL. 2022 Jun 29;10:914540. doi: 10.3389/fcell.2022.914540
• Yasuno, R; Mitani, Y; Ohmiya, Y.
  Gene Cloning and Functional Analysis of the Luciferase from Luminous Syllids of the Genus Odontosyllis.
  METHODS MOL BIOL. 2022;2524:3-15. doi: 10.1007/978-1-0716-2453-1_1
• Nagae, M; Hirata, T; Tateno, H; Mishra, SK; Manabe, N; Osada, N; Tokoro, Y; Yamaguchi, Y; Doerksen, RJ; Shimizu, T; Kizuka, Y.
  Discovery of a lectin domain that regulates enzyme activity in mouse N-acetylglucosaminyltransferase-IVa (MGAT4A).
  COMMUN BIOL. 2022 Jul 19;5(1):695. doi: 10.1038/s42003-022-03661-w
• Hirata, Y; Oda, AH; Motono, C; Shiro, M; Ohta, K.
  Imputation-free reconstructions of three-dimensional chromosome architectures in human diploid single-cells using allele-specified contacts.
  SCI REP. 2022 Jul 11;12(1):11757. doi: 10.1038/s41598-022-15038-4
• Fujikura, Y; Kimura, K; Yamanouchi, K; Sugihara, H; Hatakeyama, M; Zhuang, H; Abe, T; Daimon, M; Morita, H; Komuro, I; Oishi, K.
  A medium-chain triglyceride containing ketogenic diet exacerbates cardiomyopathy in a CRISPR/Cas9 gene-edited rat model with Duchenne muscular dystrophy.
  SCI REP. 2022 Jul 8;12(1):11580. doi: 10.1038/s41598-022-15934-9
• Mellul, M; Lahav, S; Imashimizu, M; Tokunaga, Y; Lukatsky, DB; Ram, O.
  Repetitive DNA symmetry elements negatively regulate gene expression in embryonic stem cells.
  BIOPHYS J. 2022 Jul 8:S0006-3495(22)00557-4. doi: 10.1016/j.bpj.2022.07.011
• Viswan, A; Yamagishi, A; Hoshi, M; Furuhata, Y; Kato, Y; Makimoto, N; Takeshita, T; Kobayashi, T; Iwata, F; Kimura, M; Yoshizumi, T; Nakamura, C.
  Microneedle Array-Assisted, Direct Delivery of Genome-Editing Proteins Into Plant Tissue.
  FRONT PLANT SCI. 2022 Jun 24;13:878059. doi: 10.3389/fpls.2022.878059
• Odaka, H.
  Genome-wide CRISPR/Cas9 Screening Identifies KDM2B as a Modifier of Heparan Sulfate-Protein Interactions.
  TRENDS IN GLYCOSCIENCE AND GLYCOTECHNOLOGY. 2022 Volume 34 Issue 199 Pages E63. doi: 10.4052/tigg.2203.6E
• Omoto, T; Yimiti, D; Sanada, Y; Toriyama, M; Ding, C; Hayashi, Y; Ikuta, Y; Nakasa, T; Ishikawa, M; Sano, M; Lee, M; Akimoto, T; Shukunami, C; Miyaki, S; Adachi, N.
  Tendon-Specific Dicer Deficient Mice Exhibit Hypoplastic Tendon Through the Downregulation of Tendon-Related Genes and MicroRNAs.
  FRONT CELL DEV BIOL. 2022 Jun 14;10:898428. doi: 10.3389/fcell.2022.898428
• Matsuda, K; Arima, K; Akiyama, S; Yamada, Y; Abe, Y; Suenaga, H; Hashimoto, J; Shin-Ya, K; Nishiyama, M; Wakimoto, T.
  A Natural Dihydropyridazinone Scaffold Generated from a Unique Substrate for a Hydrazine-Forming Enzyme.
  J AM CHEM SOC. 2022 Jun 30. doi: 10.1021/jacs.2c05269
• Kanda, GN; Tsuzuki, T; Terada, M; Sakai, N; Motozawa, N; Masuda, T; Nishida, M; Watanabe, CT; Higashi, T; Horiguchi, SA; Taku Kudo, T; Kamei, M; Sunagawa, GA; Matsukuma, K; Sakurada, T; Ozawa, Y; Takahashi, M; Takahashi, K; Natsume, T.
  Robotic search for optimal cell culture in regenerative medicine.
  ELIFE. 2022 Jun 28;11:e77007. doi: 10.7554/eLife.77007
• Yamamoto, K; Takahashi, K; OConnor, SE; Mimura, T.
  Imaging MS Analysis in Catharanthus roseus.
  METHODS MOL BIOL. 2022;2505:33-43. doi: 10.1007/978-1-0716-2349-7_2
• Tsukano, K; Yamamoto, T; Watanabe, T; Michiue, T.
  Xenopus Dusp6 modulates FGF signaling to precisely pattern pre-placodal ectoderm.
  DEVELOPMENTAL BIOLOGY. 2022 May 16. doi: 10.1016/j.ydbio.2022.05.009
• Oinam, L; Tateno, H.
  Glycan Profiling by Sequencing to Uncover Multicellular Communication: Launching Glycobiology in Single Cells and Microbiomes.
  FRONT CELL DEV BIOL. 2022 May 27;10:919168. doi: 10.3389/fcell.2022.919168
• Yang, Y; Akashi, Y; Shimomura, O; Tateno, H; Saito, S; Hiemori, K; Miyazaki, Y; Furuta, T; Kitaguchi, D; Kuroda, Y; Pakavarin, L; Oda, T.
  Glycan expression profile of signet ring cell gastric cancer cells and potential applicability of rBC2LCN-targeted lectin drug conjugate therapy.
  GASTRIC CANCER. 2022 Jun 17. doi: 10.1007/s10120-022-01312-x
• Sasaki, K; Suzuki, M; Sonoda, T; Schneider-Poetsch, T; Ito, A; Takagi, M; Fujishiro, S; Sohtome, Y; Dodo, K; Umehara, T; Aburatani, H; Shin-Ya, K; Nakao, Y; Sodeoka, M; Yoshida, M.
  Visualization of the dynamic interaction between nucleosomal histone H3K9 tri-methylation and HP1α chromodomain in living cells.
  CELL CHEM BIOL. 2022 Jun 18:S2451-9456(22)00198-2. doi: 10.1016/j.chembiol.2022.05.006
• Miura, I; Shams, F; Jeffries, DL; Katsura, Y; Mawaribuchi, S; Perrin, N; Ito, M; Ogata, M; Ezaz, T.
  Identification of ancestral sex chromosomes in the frog Glandirana rugosa bearing XX-XY and ZZ-ZW sex-determining systems.
  MOL ECOL. 2022 Jun 12. doi: 10.1111/mec.16551
• Wakai, K; Azuma, K; Iwamura, C; Maimaiti, M; Mikami, K; Yoneda, K; Sakamoto, S; Ikehara, S; Yamaguchi, T; Hirahara, K; Ichikawa, T; Nakayama, T; Ikehara, Y.
  The new preparation method for paraffin-embedded samples applying scanning electron microscopy revealed characteristic features in asthma-induced mice.
  SCI REP. 2022 May 31;12(1):9046. doi: 10.1038/s41598-022-12666-8
• Adler, A; Manivel, VA; Fromell, K; Teramura, Y; Ekdahl, KN; Nilsson, B.
  A Robust Method to Store Complement C3 With Superior Ability to Maintain the Native Structure and Function of the Protein.
  FRONT IMMUNOL. 2022 May 3;13:891994. doi: 10.3389/fimmu.2022.891994
• Matsuda, KM; Yoshizaki, A; Yamaguchi, K; Fukuda, E; Okumura, T; Ogawa, K; Ono, C; Norimatsu, Y; Kotani, H; Hisamoto, T; Kawanabe, R; Kuzumi, A; Fukasawa, T; Ebata, S; Miyagawa, T; Yoshizaki-Ogawa, A; Goshima, N; Sato, S.
  Autoantibody Landscape Revealed by Wet Protein Array: Sum of Autoantibody Levels Reflects Disease Status.
  FRONT IMMUNOL. 2022 May 4;13:893086. doi: 10.3389/fimmu.2022.893086
• Sugisawa, E; Kondo, T; Kumagai, Y; Kato, H; Takayama, Y; Isohashi, K; Shimosegawa, E; Takemura, N; Hayashi, Y; Sasaki, T; Martino, MM; Tominaga, M; Maruyama, K.
  Nociceptor-derived Reg3γ prevents endotoxic death by targeting kynurenine pathway in microglia.
  CELL REP. 2022 Mar 8;38(10):110462. doi: 10.1016/j.celrep.2022.110462
• Kuroki, T; Hatta, T; Natsume, T; Sakai, N; Yagi, A; Kato, K; Nagata, K; Kawaguchi, A.
  ARHGAP1 Transported with Influenza Viral Genome Ensures Integrity of Viral Particle Surface through Efficient Budozone Formation.
  MBIO. 2022 Apr 27:e0072122. doi: 10.1128/mbio.00721-22
• Kose, S; Imai, K; Watanabe, A; Nakai, A; Suzuki, Y; Imamoto, N.
  Lack of Hikeshi activates HSF1 activity under normal conditions and disturbs the heat-shock response.
  LIFE SCI ALLIANCE. 2022 May 17;5(9):e202101241. doi: 10.26508/lsa.202101241
• Kojima, S; Shiochi, N; Sato, K; Yamaura, M; Ito, T; Yamamura, N; Goto, N; Odamoto, M; Kobayashi, S; Kimura, T; Sekita, Y.
  Epigenome editing reveals core DNA methylation for imprinting control in the Dlk1-Dio3 imprinted domain.
  NUCLEIC ACIDS RESEARCH. 2022 May 11. doi: 10.1093/nar/gkac344
• Natsume, T.
  Robotic Biology: Robotics and AI Accelerate Life Science.
  CANCER SCIENCE. 113; FEB
• Kuroda, T; Hattori, Y; Kagami, A; Fukuda, E; Tamura, G.
  Genetic modification in the body to make friends with cancer cells?! Dreaming of cancer treatment in 100 years.
  CANCER SCIENCE. 113 1517-1517; FEB
• Fujimoto, M; Arai, E; Nishiyama, N; Maeshima, A; Fujimoto, H; Kitamura, H; Kuno, A; Yoshida, T; Kanai, Y.
  Lectin staining analysis of protein glycosylation in urothelial carcinomas.
  CANCER SCIENCE. 113 378-378; FEB
• Kitazume, Y; Arai, E; Matsuda, A; Kakuda, S; Ohara, K; Maeshima, A; Kuno, A; Yoshida, T; Kanai, Y.
  Alteration of protein glycosylation in renal carcinogenesis.
  CANCER SCIENCE. 113 1284-1284; FEB
• Demachi, A; Ohte, S; Uchida, R; Shin-Ya, K; Ohshiro, T; Tomoda, H; Ikeda, H.
  Discovery of prescopranone, a key intermediate in scopranone biosynthesis.
  JOURNAL OF ANTIBIOTICS. 2022 Apr 20. doi: 10.1038/s41429-022-00521-x
• Maeda, F; Kato, A; Takeshima, K; Shibazaki, M; Sato, R; Shibata,T; Miyake, K; Kozuka-Hata, H; Oyama, M; Shimizu, E; Imoto, S; Miyano, S; Adachi, S; Natsume, T; Takeuchi, K; Maruzuru, Y; Koyanagi, N; Jun, A; Yasushi, K.
  Role of the Orphan Transporter SLC35E1 in the Nuclear Egress of Herpes Simplex Virus 1.
  J VIROL. 2022 Apr 27:e0030622. doi: 10.1128/jvi.00306-22
• Mohamed, HMA; Takahashi, A; Nishijima, S; Adachi, S; Murai, I; Okamura, H; Yamamoto, T.
  CNOT1 regulates circadian behaviour through Per2 mRNA decay in a deadenylation-dependent manner.
  RNA BIOL. 2022;19(1):703-718. doi: 10.1080/15476286.2022.2071026
• Rider, SD Jr; Gadgil, RY; Hitch, DC; Damewood, FJ 4th; Zavada, N; Shanahan, M; Alhawach, V; Shrestha, R; Shin-Ya, K; Leffak, M.
  Stable G-quadruplex DNA structures promote replication-dependent genome instability.
  J BIOL CHEM. 2022 Apr 18:101947. doi: 10.1016/j.jbc.2022.101947
• Nagata, Y; Kageyama, S; Ishikawa, T; Kokura, S; Okayama, T; Abe, T; Murakami, M; Otsuka, K; Ariyoshi, T; Kojima, T; Taniguchi, K; Kobayashi, S; Shimada, H; Yajima, S; Suzuki, T; Hirano, S; Tsuchikawa, T; Shichinohe, T; Ueda, S; Kanetaka, K; Yoneda, A; Wada, H; Doki, Y; Yamaue, H; Katsuda, M; Ohi, M; Yasuda, H; Kondo, K; Kataoka, M; Kodera, Y; Koike, M; Shiraishi, T; Miyahara, Y; Goshima,N;Fukuda, E; Yamaguchi, K; Sato, E; Ikeda, H; Yamada, T; Osako, M; Hirai, K; Miyamoto, H; Watanabe, T; Shiku, H.
  Prognostic significance of NY-ESO-1 antigen and PIGR expression in esophageal tumors of CHP-NY-ESO-1-vaccinated patients as adjuvant therapy.
  CANCER IMMUNOL IMMUNOTHER. 2022 Apr 16. doi: 10.1007/s00262-022-03194-5
• Odaka, H; Hiemori, K; Shimoda, A; Akiyoshi, K; Tateno, H.
  CD63-positive extracellular vesicles are potential diagnostic biomarkers of pancreatic ductal adenocarcinoma.
  BMC GASTROENTEROLOGY. 2022 Mar 28;22(1):153. doi: 10.1186/s12876-022-02228-7
• Hayashi, Y; Yimiti, D; Sanada, Y; Ding, C; Omoto, T; Ogura, T; Nakasa, T; Ishikawa, M; Hiemori, K; Tateno, H; Miyaki, S; Adachi, N.
  The therapeutic capacity of bone marrow MSC-derived extracellular vesicles in Achilles tendon healing is passage-dependent and indicated by specific glycans.
  FEBS LETTERS. 2022 Apr;596(8):1047-1058. doi: 10.1002/1873-3468.14333
• Tasaki, M; Tateno, H; Sato, T; Tomioka, A; Kaji, H; Narimatsu, H; Saito, K; Nakagawa, Y; Aoki, T; Kamimura, M; Ushiki, T; Okada, M; Miwa, Y; Hotta, K; Yoshida, Y; Takahashi, K; Tomita, Y.
  A Novel Method of CD31-Combined ABO Carbohydrate Antigen Microarray Predicts Acute Antibody-Mediated Rejection in ABO-Incompatible Kidney Transplantation.
  TRANSPL INT. 2022 Mar 23;35:10248. doi: 10.3389/ti.2022.10248
• Oinam, L; Hayashi, R; Hiemori, K; Kiyoi, K; Sage-Ono, K; Miura, K; Ono, M; Tateno, H.
  Quantitative evaluation of glycan-binding specificity of recombinant Concanavalin A produced in lettuce (Lactuca sativa).
  BIOTECHNOL BIOENG. 2022 Apr 8. doi: 10.1002/bit.28099
• Nakagawa, Y; Hishida, T; Hatano, E; Sumaru, K; Morishita, K; Morimoto, M; Yokojima, S; Nakamura, S; Uchida, K.
  Photoinduced cytotoxicity of photochromic symmetric diarylethene derivatives: the relation of structure and cytotoxicity.
  ORGANIC & BIOMOLECULAR CHEMISTRY. 2022 Apr 13;20(15):3211-3217. doi: 10.1039/d2ob00224h
• Miyazaki, Y; Mori, N; Akagi, Y; Oda, T; Kida, YS.
  Potential Metabolite Markers for Pancreatic Cancer Identified by Metabolomic Analysis of Induced Cancer-Associated Fibroblasts.
  CANCERS. 2022 Mar 8;14(6):1375. doi: 10.3390/cancers14061375
• Santos, HJ; Hanadate, Y; Imai, K; Watanabe, H; Nozaki, T.
  Entamoeba histolytica EHD1 Is Involved in Mitosome-Endosome Contact.
  MBIO. 2022 Apr 11:e0384921. doi: 10.1128/mbio.03849-21
• Ishii, N.
  Systematic Investigation of Lanthanoid Transition Heavy Metal Acetates as Electron Staining Reagents for Protein Molecules in Biological Transmission Electron Microscopy.
  MICROSC MICROANAL. 2022 Apr 1:1-10. doi: 10.1017/S1431927622000411
• Suenaga, H; Matsuzawa, T; Sahara, T.
  Discovery by metagenomics of a functional tandem repeat sequence that controls gene expression in bacteria.
  FEMS MICROBIOL ECOL. 2022 Mar 28:fiac037. doi: 10.1093/femsec/fiac037

2021年

• Konishi, T; Takahashi, Y; Shiina, Y; Oike, H; Oishi, K.
  Time-of-day effects of consumption of fish oil-enriched sausages on serum lipid parameters and fatty acid composition in normolipidemic adults: A randomized, double-blind, placebo-controlled, and parallel-group pilot study.
  Nutrition. 2021;90:111247. doi: 10.1016/j.nut.2021.111247
• Abdelhady, AM; Hirano, Y; Onizuka, K; Okamura, H; Komatsu, Y; Nagatsugi, F.
  Synthesis of Crosslinked 2-OMe RNA Duplexes Using 2-Amino-6-Vinylpurine and Their Application for Effective Inhibition of miRNA Function.
  CURR PROTOC. Mar;2(3):e386. doi: 10.1002/cpz1.386
• Nagasaki, A; Katoh, K; Hoshi, M; Doi, M; Nakamura, C; Uyeda, TQP.
  Characterization of phalloidin-negative nuclear actin filaments in U2OS cells expressing cytoplasmic actin-EGFP.
  GENES TO CELLS. 2022 Feb 23. doi: 10.1111/gtc.12930
• Seo, N; Nakamura, J; Kaneda, T; Tateno, H; Shimoda, A; Ichiki, T; Furukawa, K; Hirabayashi, J; Akiyoshi, K; Shiku, H.
  Distinguishing functional exosomes and other extracellular vesicles as a nucleic acid cargo by the anion-exchange method.
  J EXTRACELL VESICLES. 2022 Mar;11(3):e12205. doi: 10.1002/jev2.12205
• Araiso, Y; Imai, K; Endo, T.
  Role of the TOM Complex in Protein Import into Mitochondria: Structural Views.
  ANNU REV BIOCHEM. 2022 Feb 14. doi: 10.1146/annurev-biochem-032620-104527
• Tajima, K; Yagi, H; Morisaku, T; Nishi, K; Kushige, H; Kojima, H; Higashi, H; Kuroda, K; Kitago, M; Adachi, S; Natsume, T; Nishimura, K; Oya, M; Kitagawa, Y.
  An organ-derived extracellular matrix triggers in situ kidney regeneration in a preclinical model.
  NPJ REGEN MED. 2022 Feb 28;7(1):18. doi: 10.1038/s41536-022-00213-y
• Ono, J; Koshimizu, U; Fukunishi, Y; Nakai, H.
  Multiple protonation states in ligand-free SARS-CoV-2 main protease revealed by large-scale quantum molecular dynamics simulations.
  CHEM PHYS LETT. 2022 Feb 22;794:139489. doi: 10.1016/j.cplett.2022.139489
• Radhakrishnan, N; Kaul, SC; Wadhwa, R; Sundar, D.
  Phosphatidylserine Exposed Lipid Bilayer Models for Understanding Cancer Cell Selectivity of Natural Compounds: A Molecular Dynamics Simulation Study.
  MEMBRANES 12 (1);doi: 10.3390/membranes12010064 JAN
• Malik, V; Radhakrishnan, N; Kaul, SC; Wadhwa, R; Sundar, D.
  Computational Identification of BCR-ABL Oncogenic Signaling as a Candidate Target of Withaferin A and Withanone.
  BIOMOLECULES 12 (2);doi: 10.3390/biom12020212 FEB
• Nagata, R; Suemune, H; Kobayashi, M; Shinada, T; Shin-Ya, K; Nishiyama, M; Hino, T; Sato, Y; Kuzuyama, T; Nagano, S.
  Structural Basis for the Prenylation Reaction of Carbazole-Containing Natural Products Catalyzed by Squalene Synthase-like Enzymes.
  ANGEW CHEM INT ED ENGL. 2022 Mar 2. doi: 10.1002/anie.202117430
• Mitani, Y; Yasuno, R; Kihira, K; Chung, KM; Mitsuda, N; Kanie, S; Tomioka, A; Kaji, H; Ohmiya, Y.
  Host-Dependent Producibility of Recombinant Cypridina noctiluca Luciferase With Glycosylation Defects.
  FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY 10;doi: 10.3389/fbioe.2022.774786 FEB 7
• Odaka, H; Ozaki, H; Tateno, H.
  scGR-seq: Integrated analysis of glycan and RNA in single cells.
  STAR PROTOC. 2022 Feb 18;3(1):101179. doi: 10.1016/j.xpro.2022.101179. eCollection
• Sari, AN; Dhanjal, JK; Elwakeel, A; Kumar, V; Meidinna, HN; Zhang, H; Ishida, Y; Terao, K; Sundar, D; Kaul, SC; Wadhwa, R.
  A Low Dose Combination of Withaferin A and Caffeic Acid Phenethyl Ester Possesses Anti-Metastatic Potential In Vitro: Molecular Targets and Mechanisms.
  CANCERS (Basel). 2022 Feb 3;14(3):787. doi: 10.3390/cancers14030787
• Irumagawa, S; Hiemori, K; Saito, S; Tateno, H; Arai, R.
  Self-Assembling Lectin Nano-Block Oligomers Enhance Binding Avidity to Glycans.
  INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 23 (2);doi: 10.3390/ijms23020676 JAN
• Suzuki, R; Nakamura, Y; Koiwai, R; Fuseya, S; Murakami, Y; Hagiwara, K; Sato, T; Takahashi, S; Kudo, T.
  Global Loss of Core 1-Derived O-Glycans in Mice Leads to High Mortality Due to Acute Kidney Failure and Gastric Ulcers.
  INT J MOL SCI. 2022 Jan 24;23(3):1273. doi: 10.3390/ijms23031273
• Saiki, P; Yoshihara, M; Kawano, Y; Miyazaki, H; Miyazaki, K.
  Anti-Inflammatory Effects of Heliangin from Jerusalem Artichoke (Helianthus tuberosus) Leaves Might Prevent Atherosclerosis.
  BIOMOLECULES 12 (1); doi:10.3390/biom12010091 JAN
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