(10) Kamezaki K, Maeda T, Ishidoya S, Tsukasaki A, Murayama S, Kaneyasu
N. Low blank sampling method for measurement of the nitrogen isotopic composition
of atmospheric NOx. Plos One.19(2): e0298539. 2024
(9) Oba K, Suenaga T, Yasuda S, Kuroiwa M, Hori T, Lackner S, Terada A.
Quest for Nitrous Oxide-reducing Bacteria Present in an Anammox Biofilm
Fed with Nitrous Oxide. Microbes Environ. 39(1): ME23106. 2024
(8) Honjo M, Suzuki K, Katai J, Tashiro Y, Aoyagi T, Hori T, Okada T, Saito
Y, Futamata H. Stable States of a Microbial Community Are Formed by Dynamic
Metabolic Networks with Members Functioning to Achieve Both Robustness
and Plasticity. Microbes Environ. 39(1): ME23091. 2024
(7) Miyajima Y, Aoyagi T, Yoshioka H, Hori T, Takahashi HA, Tanaka M, Tsukasaki A, Goto S, Suzumura M. Impact of Concurrent aerobic-anaerobic Methanotrophy on Methane Emission from Marine Sediments in Gas Hydrate Area. Environ Sci Technol. 58(11): 4979–4988. 2024
(6) Yoshino H, Van Phan H, Mori N, Ohkuma N, Kawakami M, Nihei M, Hashimoto
S, Wakabayashi K, Hori T, Terada A. Anti-biofouling performance and microbial
communities of an integrated fixed-film activated sludge membrane bioreactor
with a fibrous carrier material: Pilot-scale demonstration. Sci Total Environ. 918: 170291. 2024
(5) Duan J, Kitamura K, Tsukamoto H, Van Phan H, Oba K, Hori T, Fujiwara
T, Terada A. Enhanced granulation of activated sludge in an airlift reactor
for organic carbon removal and ammonia retention from industrial fermentation
wastewater: A comparative study. Water Res. 251: 121091. 2024
(4) Duan J, Oba K, Hori T, Fujiwara T, Lackner S, Terada A. Modeling of an aerobic granular sludge process for ammonia retention: Insights into granule size, dissolved oxygen concentration, and solids retention time. J Environ Chem Eng. 12(2): 112245. 2024
(3) Sato Y, Hamai H, Masaki Y, Aoyagi T, Inaba T, Hori T, Habe H. Replacing
rice bran with low-molecular-weight substrates affected the performance
and metabolic feature of sulfate-reducing bioreactors treating acid mine
drainage. J Environ Chem Eng. 12(2): 112118. 2024
(2) Maeda A, Nishijima M, Iguchi A, Ota Y, Suzumura M, Suzuki A. Environmental DNA metabarcoding of foraminifera for biological monitoring of bottom water and sediments on the Takuyo-Daigo Seamount in the northwestern Pacific. Front Mar Sci. 10, 1–18. 2024
(1) Ota Y, Iguchi A, Nishijima M, Mukai R, Suzumura M, Yoshioka H, Suzuki
A, Tsukasaki A, Aoyagi T, Hori T. Methane diffusion affects characteristics
of benthic communities in and around microbial mat-covered sediments in
the northeastern Japan sea. Chemosphere. 349: 140964. 2024
(19) Miyajima Y, Araoka D, Yoshimura T, Ota Y, Suzuki A, Yoshioka H, Suzumura
M, Smrzka D, Peckmann J, Bohrmann G. Lithium isotope systematics of methane-seep
carbonates as an archive of fluid origins and flow rates. Geochim Cosmochim Acta. 361:152–170. 2023
(18) Zhou X, Fujiwara T, Hidaka T, Nishimura F, Nakanishi T, Terada A,
Hori T. Evaluation of nitrous oxide emission during ammonia retention from
simulated industrial wastewater by microaerobic activated sludge process.
Water Res. 247: 120780. 2023
(17) Gonzales RR, Nakagawa K, Kumagai K, Hasegawa S, Matsuoka A, Li Z,
Mai Z, Yoshioka T, Hori T, Matsuyama H. Hybrid osmotically assisted reverse
osmosis and reverse osmosis (OARO-RO) process for minimal liquid discharge
of high strength nitrogenous wastewater and enrichment of ammoniacal nitrogen.
Water Res. 246: 120716. 2023
(16) Inaba T, Hori T, Tsuchiya M, Ihara H, Uchida E, Gu JD, Katayama Y.
Microscopic evidence of sandstone deterioration and damage by fungi isolated
from the Angkor monuments in simulation experiments. Sci Total Environ. 20(896): 165265. 2023
(15) Sato Y, Miwa T, Inaba T, Akachi T, Tanaka E, Hori T, Murofushi K, Takagi H, Futamata H, Aoyagi T, Habe H. Microbially produced fertilizer provides rhizobacteria to hydroponic tomato roots by forming beneficial biofilms. Appl Microbiol Biotechnol. 107(23):7365-7374. 2023
(14) Inaba T, Aizawa H, Aoyagi T, Sato Y, Hori T, Nishimura T, Habe H.
Startup performance and microbial composition of a pilot-scale rapid sand filter for the treatment of manganese-containing mine water. Chemosphere. 343: 140229. 2023
(13) Tsukamoto H, Phan HV, Suenaga T, Yasuda S, Kuroiwa M, Riya S, Ogata A, Hori T, Terada A.
Microaerophilic Activated Sludge System for Ammonia Retention toward Recovery from High-Strength Nitrogenous Wastewater: Performance and Microbial Communities. Envrion Sci Technol. 57(37): 13874-13886. 2023
(12) Kuroda K, Tomita S, Kurashita H, Hatamoto M, Yamaguchi T, Hori T, Aoyagi T, Sato Y, Inaba T, Habe H, Tamaki H, Hagihara Y, Tamura T, Narihiro T.
Metabolic implications for predatory and parasitic bacterial lineages in activated sludge wastewater treatment systems. Water Res X. 20: 100196. 2023
(11) Shirane S, Momma N, Usami T, Suzuki C, Hori T, Aoyagi T, Amachi S.
Fungicidal Activity of Caproate Produced by Clostridium sp. strain E801, a Bacterium Isolated from Cocopeat Medium Subjected to
Anaerobic Soil Disinfestation. Agron. 13: 747. 2023
(10) Nouzaki K, Tanaka R, Sato Y, Inaba T, Aoyagi T, Hori T, Yanagishita H, Habe H. Evaluating the Optimal Oil Concentrations in the Startup Performance of a Membrane Bioreactor Treating Oily Noodle-soup Wastewater. J Oleo Sci. 72: 357-367. 2023
(9) Duan J, Phan HV, Tsukamoto H, Hori T, Terada A. Microaerophilic activated
sludge system for ammonia retention from high-strength nitrogenous wastewater:
Biokinetics and mathematical modeling. Biochem Eng J. 191: 108790. 2023
(8) Inaba T, Yamaguchi M, Taniguchi A, Sato Y, Aoyagi T, Hori T, Inoue
H, Fujita M, Iwata M, Iwata Y, Habe H. Evaluation of dye decolorization
using anaerobic granular sludge from an expanded granular sludge bed based
on spectrometric and microbiome analyses. J Gen Appl Microbiol. 68: 242-247. 2023
(7) Kise H, Iguchi A, Saito N, Yoshioka Y, Uda K, Suzuki T, Nagano AJ,
Suzuki A, Iwasaki N. Genetic population structure of the precious coral
Corallium japonicum in the Northwest Pacific. Front Mar Sci. in press. 2023
(6) Kise H, Santos MEA, Fourreau CJL, Iguchi A, Goto R, Reimer, JD. Evolutionary patterns of host switching, lifestyle mode, and the diversification history in symbiotic zoantharians. Mol Phylogenet Evol. 182: 107732. 2023
(5) Kise H, Nishijima M, Iguchi A, Minatoya J, Yokooka H, Ise Y, Suzuki
A. A new hexactinellid-sponge-associated zoantharian (Porifera, Hexasterophora)
from the northwestern Pacific Ocean. ZooKeys.1156: 71-85. 2023
(4) Kise H, Reimer JD, Pirro S. The Complete Genome Sequences of 7 Species
of Epizoanthus (Epizoanthidae, Zoantharia, Hexacorallia, Cnidaria). Biodiversity genomes. 2023
(3) Santos MEA, Kise H, Fourreau CJL, Poliseno A, Pirro S, Reimer JD. The
Complete Genome Sequences of 13 Species of Brachycnemina (Cnidaria, Hexacorallia,
Anthozoa, Zoantharia). Biodiversity Genomes. 2023
(2) Kise H, Iguchi A, Ikegami T, Onishi Y, Goto K, Tanaka Y, Washburn WT, Nishijima M, Kunishima T, Okamoto N, Suzuki, A. Genetic population structures of common scavenging species near hydrothermal vents in the Okinawa Trough. Sci Rep. 13: 2348. 2023
(1) Richards ZT, Kise H, West KM. The complete mitochondrial genome of
the invasive cyanobacteriosponge Terpios hoshinota (Demospongiae, Suberitida,
Suberitidae). Mitochondrial DNA B: Resour. 8: 319-323. 2023
(7) Ota Y, Suzumura M, Tsukasaki A, Suzuki A, Yamaoka K, Asada M, Satoh
M. Anaerobic oxidation of methane and trace-element geochemistry in microbial
mat-covered sediments related to methane seepage, northeastern Japan Sea.
Chem Geol. 611: 121093. 2022
(6) Inaba T, Goto T, Aoyagi T, Hori T, Aoki K, Sato Y, Ono N, Furihata
T, Habe H, Ogino S, Ogata A. Biological treatment of ironworks wastewater
with high-concentration nitrate using a nitrogen gas aerated membrane bioreactor.
Chem Eng J. 450: 138366. 2022
(5) Zhou Y, Toyoda R, Suenaga T, Aoyagi T, Hori T, Terada A. Low nitrous
oxide concentration and spatial microbial community transition across an
urban river affected by treated sewage. Water Res. 216: 118276. 2022
(4) Sato Y, Hamai T, Hori T, Aoyagi T, Inaba T, Hayashi K, Kobayashi M,
Sakata T, Habe H. Optimal start-up conditions for the efficient treatment
of acid mine drainage using sulfate-reducing bioreactors based on physicochemical
and microbiome analyses. J Hazard Mater. 423: 127089. 2022
(3) Guo Y, Ihara H, Aoyagi T, Hori T, Katayama Y. Draft Genome Sequences of Sulfurovum spp. TSL1 and TSL6, Two Sulfur-Oxidizing Bacteria Isolated from Marine Sediment. Microbiol Resour Announc. 11: e00922-21. 2022
(2) Ota Y, Kawahata H, Kuroda J, Suzuki A, Abe-Ouchi, A, Jimenez-Espejo,
FJ. Millennial-scale variability of Indian summer monsoon constrained by
the western Bay of Bengal sediments: Implication from geochemical proxies
of sea surface salinity and river runoff. Glob Planet Change. 208: 103719. 2022
(1) Ota Y, Suzumura M, Tsukasaki A, Suzuki A, Seike K, Minatoya J. Sediment accumulation rates and particle mixing at northwestern Pacific seamounts. J Mar Syst. 229: 103719. 2022
(12) Negishi N, Inaba T, Miyazaki Y, Ishii G, Yang Y, Koura S. Aqueous
mechano-bactericidal action of acicular aragonite crystals. Sci Rep. 11: 19218. 2021
(11) Guo Y, Aoyagi T, Hori T. Comparative insights into genome signatures
of ferric iron oxide-and anode-stimulated Desulfuromonas spp. strains. BMC genomics. 22: 475. 2021
(10) Sato Y, Jang S, Takeshita K, Itoh H, Koike H, Tago K, Hayatsu M, Hori
T, Kikuchi Y. Insecticide resistance by a host-symbiont reciprocal detoxification.
Nat commun. 12: 6432. 2021
(9) Shimoji H, Itoh H, Matsuura Y, Yamashita R, Hori T, Hojo MK, Kikuchi
Y. Worker-dependent gut symbiosis in an ant. ISME Commun. 1: 60. 2021
(8) Suenaga T, OtaT, Oba K, Usui K, Sako T, Hori T, Riya S, Hosomi M, Chandran
K, Lackner S, Smets FB, Terada A. Combination of 15N Tracer and Microbial
Analyses Discloses N2O Sink Potential of the Anammox Community. Envrion Sci Technol. 55: 9231-9242. 2021
(7) Guo Y, Aoyagi T, Hori T. Draft Genome Sequences of the Ferric Iron-Reducing
Geobacter sp. Strains AOG1 and AOG2, Isolated from Enrichment Cultures on Crystalline
Iron(III) Oxides. Microbiol Resour Announc. 10: e00913-21. 2021
(6) Aoyagi T, Katayama Y, Aizawa H, Takasaki M, Hori T. Nitrate-driven
trophic association of sulfur-cycling microorganisms in tsunami-deposited
marine sediment revealed by high-sensitivity 13C-bicarbonate probing. Envrion Sci Technol. 55: 8410-8421. 2021
(5) Aoyagi T, Mori Y, Nanao M, Matsuyama Y, Sato Y, Inaba T, Aizawa H,
Hayakawa T, Moriya M, Higo Y, Habe H, Hori T. Effective Se reduction by
lactate-stimulated indigenous microbial communities in excavated waste
rocks. J Hazard Mater. 403:123908. 2021.
(4) Mahmood M, Taki S, Nakai S, Gotoh T, Nishijima W, Umehara A, Aoyagi
T, Sato Y, Hori T, Katayama Y, Hajdu-Rahkama R, Puhakka A J. Increase in
sedimentary organic carbon with a change from hypoxic to oxic conditions.
Mar Pollut Bull. 168:112397. 2021
(3) Sato Y, Tanaka E, Hori T, Futamata H, Murofushi K, Takagi H, Akachi
T, Miwa T, Inaba T, Aoyagi T, Habe H. Efficient conversion of organic nitrogenous
wastewater to nitrate solution driven by comammox Nitrospira. Water Res. 197:117088. 2021
(2) Ihara H, Kumagai A, Hori T, Nanba K, Aoyagi T, Takasaki M, Katayama
Y. Direct comparison of bacterial communities in soils contaminated with
different levels of radioactive cesium from the first Fukushima nuclear
power plant accident. Sci Total Environ. 756: 143844.2021
(1) Ota Y, Suzuki A, Yamaoka K, Nagao M, Tanaka Y, Irizuki T, Fujiwara
O, Yoshioka K, Kawagata S, Kawano S, Nishimura O. Geochemical distribution
of heavy metal elements and potential ecological risk assessment of Matsushima
Bay sediments during 2012–2016. Sci Total Env. 751:141825. 2021
(22) Yoshino H, Hosoe A, Hori T, Hosomi M, Terada A. Excess Sludge Reduction
Using a High-pressure Jet Device via a Modified Ludzack-Ettinger Process:
Performance and Microbial Communities. J Water Environ Technol. 18(4):238-253. 2020
(21) Yamaoka, K., A. Suzuki, Y. Tanaka, M. Suzumura, A. Tsukasaki, A. Shimamoto,
T. Fukuhara, S. Kato, N. Okamoto and Y. Igarashi. Late summer peak and
scavenging-dominant metal fluxes in particulate export near a seamount
in the western North Pacific subtropical gyre. Frontiers Earth Sci. 8: 558823. 2020
(20) Tanaka R, Nouzaki K, Navarro RR, Inaba T, Aoyagi T, Sato Y, Ogata A, Yanagishita H, Hori T, Habe H. Activated sludge microbiome in a membrane bioreactor for treating Ramen noodle-soup wastewater. J Gen Appl Microbiol. 66(6): 339-343. 2020
(19) Morono Y, Ito M, Hoshino T, Terada T, Hori T, Ikehara M, D'Hondt S, Inagaki F. Aerobic microbial life persists in oxic marine sediment as old as 101.5 million years. Nat Commun. 11(1):3626. 2020. 2020
(18) Seike K, Shirai K, Kubota K, Ota Y, Sassa S. Does trace fossil size correspond with burrower population density? An example from the modern counterpart of the trace fossil Bichordites. Palaeogeogr Palaeoclimatol Palaeoecol. 557:109946. 2020
(17) Kajita H, Ota Y, Yoshimura T, Araoka D, Manaka T, Ziyu O, Iwasaki S, Yanase T, Inamura A, Uchida E, Zheng H, Yang Q, Wang K, Suzuki A, Kawahata H. Seasonal and Spatial Variations of Chemical Weathering in the Mekong Basin: From the Headwaters to the Lower Reaches. Aquat Geochem. 26:137–159. 2020
(16) Habe H, Sato Y, Aoyagi T, Inaba T, Hori T, Hamai T, Hayashi K, Kobayashi M, Sakata T, Sato N. Design, application, and microbiome of sulfate-reducing bioreactors for treatment of mining-influenced water. Appl Microbiol Biotechnol. 104(16):6893-6903. 2020
(15) Yasuda S, Toyoda R, Agrawal S, Suenaga T, Riya S, Hori T, Lackner S, Hosomi M, Terada A. Exploration and enrichment of methane-oxidizing bacteria derived from a rice paddy field emitting highly concentrated methane. J Biosci Bioeng. 130(3):311-318. 2020
(14) Inaba T, Su T, Aoyagi T, Aizawa H, Sato Y, Suh C, Lee JH, Hori T, Ogata A, Habe H. Microbial community in an anaerobic membrane bioreactor and its performance in treating organic solid waste under controlled and deteriorated conditions. J Environ Manage. 269:110786. 2020
(13) Inaba T, Aoyagi T, Hori T, Charfi A, Suh C, Lee JH, Sato Y, Ogata A, Aizawa H, Habe H. Clarifying prokaryotic and eukaryotic biofilm microbiomes in anaerobic membrane bioreactor by non-destructive microscopy and high-throughput sequencing. Chemosphere. 254:126810. 2020
(12) Yoshino H, Hori T, Hosomi M, Terada A. Identifying prokaryotes and eukaryotes disintegrated by a high-pressure jet device for excess activated sludge reduction. Biochem Eng J. 157, 107495. 2020
(11) Aoyagi T, Inaba T, Aizawa H, Mayumi D, Sakata S, Charfi A, Suh C, Lee JH, Sato Y, Ogata A, Habe H, Hori T. Unexpected diversity of acetate degraders in anaerobic membrane bioreactor treating organic solid waste revealed by high-sensitivity stable isotope probing. Water Res. 176:115750. 2020
(10) Guo Y, Aoyagi T, Inaba T, Sato Y, Habe H, Hori T. Complete Genome Sequence of Desulfuromonas sp. Strain AOP6, an Iron(III) Reducer Isolated from Subseafloor Sediment. Microbiol Resour Announc. 9(12):e01325-19. 2020
(9) Fujioka T, Aizawa H, Kodamatani H, Fouling substances causing variable rejection of a small and uncharged trace organic chemical by reverse osmosis membranes. Environ Technol Innov. 17, 100576. 2020
(8) Sato Y, Zhao YJ, Hori T, Aoyagi T, Inaba T, Aizawa H, Ogata A, Habe H. Transition of microbial community structures after development of membrane fouling in membrane bioreactors (MBRs). AMB Express. 10(1):18. 2020
(7) Noda K, Aizawa H, Marumoto K, Basic Detection Characteristics of Quartz Crystal Microbalance-based Method of Determination of Mercury. Sens Mater. 32(6):1133. 2020
(6) Aizawa H, Kusakari SI, Yamada K, Noda K, Habe H, Development of Organic Gas Sensor Using Quartz Crystal Microbalance Coated with Plasma-polymerized Films. Sens Mater. 32(3):1123. 2020
(5) Navarro RR, Otsuka Y, Matsuo K, Sasaki K, Sasaki K, Hori T, Habe H, Nakamura M, Nakashimada Y, Kimbara K, Kato J. Combined simultaneous enzymatic saccharification and comminution (SESC) and anaerobic digestion for sustainable biomethane generation from wood lignocellulose and the biochemical characterization of residual sludge solid. Bioresour Technol. 300:122622. 2020
(4) Inaba T, Obana N, Habe H, Nomura N. Biofilm Formation by Streptococcus mutans is Enhanced by Indole via the Quorum Sensing Pathway. Microbes Environ. 2020
(3) Inaba T, Aoyagi T, Hori T, Charfi A, Suh C, Lee JH, Sato Y, Ogata A, Aizawa H, Habe H. Long-term acclimatization of sludge microbiome for treatment of high-strength organic solid waste in anaerobic membrane bioreactor. Biochem Eng J. 154:107461. 2020
(2) Furuichi Y, Yoshimoto S, Inaba T, Nomura N, Hori K. Process Description of an Unconventional Biofilm Formation by Bacterial Cells Autoagglutinating through Sticky, Long, and Peritrichate Nanofibers. Environ Sci Technol. 2020
(1) Sato-Takabe Y, Hirose S, Hori T, Hanada S. Abundance and Spatial Distribution of Aerobic Anoxygenic Phototrophic Bacteria in Tama River, Japan. Water. 12(1):150. 2020
(11) Hanajima D, Aoyagi T, Hori T. Dead bacterial biomass-assimilating bacterial populations in compost revealed by high-sensitivity stable isotope probing. Environ Int. 133:105235. 2019
(10) Yamamura S, Kurasawa H, Kashiwabara Y, Hori T, Aoyagi T, Nakajima N, Amachi S. Soil Microbial Communities Involved in Reductive Dissolution of Arsenic from Arsenate-laden Minerals with Different Carbon Sources. Environ Sci Technol. 53(21):12398-12406. 2019
(9) Suenaga T, Hori T, Riya S, Hosomi M, Smets BF, Terada A. Enrichment, Isolation, and Characterization of High-Affinity N2O-Reducing Bacteria in a Gas-Permeable Membrane Reactor. Environ Sci Technol. 53(20):12101-12112. 2019
(8) Habe H, Koike H, Sato Y, Iimura Y, Hori T, Kanno M, Kimura N, Kirimura K. Identification and characterization of levulinyl-CoA synthetase from Pseudomonas citronellolis, which differs phylogenetically from LvaE of Pseudomonas putida. AMB Express. 9(1):127. 2019
(7) Sato Y, Hamai T, Hori T, Aoyagi T, Inaba T, Kobayashi M, Habe H, Sakata T. Desulfosporosinus spp. were the most predominant sulfate-reducing bacteria in pilot- and laboratory-scale passive bioreactors for acid mine drainage treatment. Appl Microbiol Biotechnol. 103(18):7783-7793. 2019
(6) Ihara H, Hori T, Aoyagi T, Hosono H, Takasaki M, Katayama Y. Stratification of Sulfur Species and Microbial Community in Launched Marine Sediment by an Improved Sulfur-Fractionation Method and 16S rRNA Gene Sequencing. Microbes Environ. 34(2):199-205. 2019
(5) Zhao YJ, Sato Y, Inaba T, Aoyagi T, Hori T, Habe H. Activated sludge microbial communities of a chemical plant wastewater treatment facility with high-strength bromide ions and aromatic substances. J Gen Appl Microbiol. 65(2):106-110. 2019
(4) Sato Y, Hori T, Koike H, Navarro RR, Ogata A, Habe H. Transcriptome analysis of activated sludge microbiomes reveals an unexpected role of minority nitrifiers in carbon metabolism. Commun Biol. 2:179. 2019
(3) Aoyagi T, Kashiwabara Y, Kurasawa H, Amachi S, Nakajima N, Hori T, Yamamura S. Draft Genome Sequence of a Novel Lactate-Fermenting Bacterial Strain of the Family Sporomusaceae within the Class Negativicutes. Microbiol Resour Announc. 8(10). 2019
(2) Narihiro T, Nobu KM, Hori T, Aoyagi T, Sato Y, Inaba T, Aizawa H, Tamaki H, Habe H. Effects of the Wastewater Flow Rate on Interactions between the Genus Nitrosomonas and Diverse Populations in an Activated Sludge Microbiome. Microbes Environ. 34(1):89-94. 2019
(1) Song K, Sawayanagi K, Numano T, Taniichi Y, Kikuchi T, Takeda T, Kanou H, Riya S, Hori T, Hosomi M, Terada A. High-rate partial nitrification of semiconductor wastewater: Implications of online monitoring and microbial community structure. Biochem Eng J. 143:34-40. 2019
(11) Inaba T, Hori T, Aizawa H, Sato Y, Ogata A, Habe H. Microbiomes and chemical components of feed water and membrane-attached biofilm in reverse osmosis system to treat membrane bioreactor effluents. Sci Rep. 8(1):16805. 2018
(10) Fujioka T, Hoang AT, Aizawa H, Ashiba H, Fujimaki M, Leddy M, Real-Time Online Monitoring for Assessing Removal of Bacteria by Reverse Osmosis. Environ Sci Technol Lett. 5(6):389. 2018
(9) Aoyagi T, Morishita F, Sugiyama Y, Ichikawa D, Mayumi D, Kikuchi Y, Ogata A, Muraoka K, Habe H, Hori T. Identification of active and taxonomically diverse 1,4-dioxane degraders in a full-scale activated sludge system by high-sensitivity stable isotope probing. ISME J. 12(10):2376-2388. 2018
(8) Aoyagi T, Hamai T, Hori T, Sato Y, Kobayashi M, Sato Y, Inaba T, Ogata A, Habe H, Sakata T. Microbial community analysis of sulfate-reducing passive bioreactor for treating acid mine drainage under failure conditions after long-term continuous operation. J Environ Chem Eng. 6(5):5795-5800. 2018
Inaba T, Sato Y, Koike H, Hori T, Kanno M, Kimura N, Kirimura K, Habe H. Draft genome sequence of Pseudomonas citronelollis LA18T, a bacterium that use levulinic acid. Microbiol Resour Announc. 7(5). 2018
(7) Suenaga T, Aoyagi T, Hosomi M, Hori T, Terada A. Draft Genome Sequence of Azospira sp. Strain I13, a Nitrous Oxide-Reducing Bacterium Harboring Clade II Type nosZ. Genome Announc. 6(20). 2018
(6) Miao J, Yin Q, Hori T, Aoyagi T, Habe H, Wu G. Nitrifiers activity and community characteristics under stress conditions in partial nitrification systems treating ammonium-rich wastewater. J Environ Sci. 73:1-8. 2018
(6) Itoh H, Hori T, Sato Y, Nagayama A, Tago K, Hayatsu M, Kikuchi Y. Infection dynamics of insecticide-degrading symbionts from soil to insects in response to insecticide spraying. ISME J. 12(3):909-920. 2018
(5) Meng L, Xie L, Kinh CT, Suenaga T, Hori T, Riya S, Terada A, Hosomi M. Influence of feedstock-to-inoculum ratio on performance and microbial community succession during solid-state thermophilic anaerobic co-digestion of pig urine and rice straw. Bioresour Technol. 252:127-133. 2018
(4) Inaba T, Hori T, Sato Y, Aoyagi T, Hanajima D, Ogata A, Habe H. Eukaryotic Microbiomes of Membrane-Attached Biofilms in Membrane Bioreactors Analyzed by High-Throughput Sequencing and Microscopic Observations. Microbes Environ. 33(1):98-101. 2018
(3) Yokota N, Watanabe Y, Tokutomi T, Kiyokawa T, Hori T, Ikeda D, Song K, Hosomi M, Terada A. High-rate nitrogen removal from waste brine by marine anammox bacteria in a pilot-scale UASB reactor. Appl Microbiol Biotechnol. 102(3):1501-1512. 2018
(2) Inaba T, Hori T, Navarro RR, Ogata A, Hanajima D, Habe H. Revealing sludge and biofilm microbiomes in membrane bioreactor treating piggery wastewater by non-destructive microscopy and 16S rRNA gene sequencing. Chem Eng J. 331:75-83. 2018
(1) Sato Y, Hamai T, Hori T, Habe H, Kobayashi M, Sakata T. Year-round
Performance of a Passive Sulfate-reducing Bioreactor that Uses Rice Bran
as an Organic Carbon Source to Treat Acid Mine Drainage. Mine Water Environ. 37(3):586-594. 2018
(10) Kinh CT, Suenaga T, Hori T, Riya S, Hosomi M, Smets BF, Terada A. Counter-diffusion biofilms have lower N2O emissions than co-diffusion biofilms during simultaneous nitrification and denitrification: Insights from depth-profile analysis. Water Res. 124:363-371. 2017
(9) Aoyagi T, Hamai T, Hori T, Sato Y, Kobayashi M, Sato Y, Inaba T, Ogata A, Habe H, Sakata T. Hydraulic retention time and pH affect the performance and microbial communities of passive bioreactors for treatment of acid mine drainage. AMB Express. 7:142. 2017
(8) Aoyagi T, Koike H, Morita T, Sato Y, Habe H, Hori T. Draft Genome Sequence of Geobacter pelophilus Strain Dfr2, a Ferric Iron-Reducing Bacterium. Genome Announc. 5(24). 2017
(7) Yoshino H, Suenaga T, Fujii T, Hori T, Terada A, Hosomi M. Efficacy of a high-pressure jet device for excess sludge reduction in a conventional activated sludge process: Pilot-scale demonstration. Chem Eng J. 326:78-86. 2017
(6) Fujioka T, Kodamatani H, Aizawa H, Gray S, Ishida KP, Nghiem LD, Role of membrane fouling substances on the rejection of N-nitrosamines by reverse osmosis. Water Res. 118:187. 2017
(5) Inaba T, Hori T, Aizawa H, Ogata A, Habe H. Architecture, component, and microbiome of biofilm involved in the fouling of membrane bioreactors. NPJ Biofilms Microbiomes. 3:5. 2017
(4) Fang J, Kato C, Runko GM, Nogi Y, Hori T, Li J, Morono Y, Inagaki F. Predominance of Viable Spore-Forming Piezophilic Bacteria in High-Pressure Enrichment Cultures from ~1.5 to 2.4 km-Deep Coal-Bearing Sediments below the Ocean Floor. Front Microbiol. 8:137. 2017
(3) Ihara H, Hori T, Aoyagi T, Takasaki M, Katayama Y. Sulfur-Oxidizing Bacteria Mediate Microbial Community Succession and Element Cycling in Launched Marine Sediment. Front Microbiol. 8:152. 2017
(2) Habe H, Kondo S, Sato Y, Hori T, Kanno M, Kimura N, Koike H, Kirimura K. Electrodialytic separation of levulinic acid catalytically synthesized from woody biomass for use in microbial conversion. Biotechnol Prog. 33(2):448-453. 2017
(1) Kinh CT, Ahn J, Suenaga T, Sittivorakulpong N, Noophan P, Hori T, Riya S, Hosomi M, Terada A. Free nitrous acid and pH determine the predominant ammonia-oxidizing bacteria and amount of N2O in a partial nitrifying reactor. Appl Microbiol Biotechnol. 101(4):1673-1683. 2017
(14) Kuwae T, Kanda J, Kubo A, Nakajima F, Ogawa H, Sohma A, Suzumura M. Blue Carbon in human-dominated estuarine and shallow coastal systems. Ambio. 45:290-301.2016
(13) Tsukasaki A, Tsurushima N, Nakazato T, Huang Y, Tanimoto T, Suzumura M, Nishijima W. Nutrient dynamics in core sediments of an artificial basal medium prepared with steelmaking slag and dredged materials. J Oceanogr. 72(6):867-881.2016
(12) Sato Y, Hori T, Habe H, Ogata A. A preliminary diagnostic method for membrane fouling using extracellular proteins secreted in pilot-scale membrane bioreactors. J Environ Biotechnol. 16(1):65-68. 2016
(11) Navarro RR, Hori T, Sato Y, Tanaka R, Ogata A, Habe H. High susceptibility of aerobic microbiota in membrane bioreactor (MBR) sludge towards olive oil as revealed by high-throughput sequencing of 16S rRNA genes. J Environ Chem Eng. 4(4):4392-4399. 2016
(10) Sato Y, Koike H, Kondo S, Hori T, Kanno M, Kimura N, Morita T, Kirimura K, Habe H. Draft genome sequence of Burkholderia stabilis LA20W, a trehalose producer that uses levulinic acid as a substrate. Genome announc. 4(4). 2016
(9) Sato Y, Hori T, Navarro RR, Naganawa R, Habe H, Ogata A. Effects of organic-loading-rate reduction on sludge biomass and microbial community in a deteriorated pilot-scale membrane bioreactor. Microbes Environ. 31(3):361-364. 2016
(8) Inagaki F, Hinrichs KU, Kubo Y, the IODP Expedition 337 Scientists. IODP Expedition 337: Deep coalbed biosphere off Shimokita -microbial processes and hydrocarbon system associated with deeply buried coalbed in the ocean. Sci Dril. 21:17-28. 2016
(7) Sato Y, Hori T, Navarro RR, Habe H, Ogata A. Functional maintenance and structural flexibility of microbial communities perturbed by simulated intense rainfall in a pilot-scale membrane bioreactor. Appl Microbiol Biotechnol. 100(14):6447-6456. 2016
(6) Navarro RR, Hori T, Inaba T, Matsuo K, Habe H, Ogata A. High-resolution phylogenetic analysis of residual bacterial species of fouled membranes after NaOCl cleaning. Water Res. 94:166-175. 2016
(5) Hoshino T, Kuratomi T, Morono Y, Hori T, Oiwane H, Kiyokawa S, Inagaki F. Ecophysiology of Zetaproteobacteria associated with shallow hydrothermal iron-oxyhydroxide deposits in Nagahama Bay of Satsuma Iwo-Jima, Japan. Front Microbiol. 6:1554. 2016
(4) Sato Y, Hori T, Navarro RR, Habe H, Yanagishita H, Ogata A. Fine-scale monitoring of shifts in microbial community composition after high organic loading in a pilot-scale membrane bioreactor. J Biosci Bioeng. 121(5):550-556. 2016
(3) Yoshimune K, Yamamoto M, Aoyagi T, Yumoto I. High and Rapid L-lactic Acid Production by Alkaliphilic Enterococcus sp. by Adding Wheat Bran Hydrolysate. Ferment Technol. 6(1): 11000138. 2016
(2) Toyofuku M, Inaba T, Kiyokawa T, Obana N, Yawata Y, Nomura N. Environmental factors that shape biofilm formation. Biosci Biotechnol Biochem. 2016
(1) Fouquet T, Aizawa H, Sato H, Taking MALDI SpiralTOF high-resolution mass spectrometry and mass defect analysis to the next level with ethylene vinyl acetate vinyl alcohol terpolymers. Rapid Commun. Mass Spectrom., 30(15):1818-1822. 2016
(17) Tsukasaki A, Suzumura M, Lichtschlag A, Stahl H, James R H. Phosphorus
behavior in sediments during a sub-seabed CO2 controlled release experiment.
Int J Greenh Gas Con. 38:102-109. 2015
(16) Nishijima W, Tsukasaki A, Tanimoto T, Nagao M, Tsurushima N, Suzumura
M. Applicability of steel slag as a substrate in eelgrass (Zostera marina
L.) beds restoration in coastal Japan. Ecol Eng. 81:418-427. 2015
(15) Tsukasaki A, Suzumura M, Nishijima W. Fractionation of phosphorus
in steelmaking slags and aquatic particulate materials using a sequential
extraction technique. ISIJ Int. 55(1):183-189. 2015
(14) Takeshita K, Matsuura Y, Itoh H, Navarro R, Hori T, Sone T, Kamagata
Y, Mergaert P, Kikuchi Y. Burkholderia of plant-beneficial group are symbiotically
associated with bordered plant bugs (Heteroptera: Pyrrhocoroidea: Largidae).
Microbes Environ. 30(4):321-329. 2015
(13) Sato Y, Hori T, Navarro RR, Habe H, Ogata A. Effect of a microbiota
activator on accumulated ammonium and microbial community structure in
a pilot-scale membrane bioreactor. J Gen Appl Microbiol. 61(4):132-138. 2015
(12) Ohbayashi T, Takeshita K, Kitagawa W, Nikoh N, Koga R, Meng XY, Tago
K, Hori T, Hayatsu M, Asano K, Kamagata Y, Lee BL, Fukatsu T, Kikuchi Y.
Insect’s intestinal organ for symbiont sorting. Proc Natl Acad Sci USA. 112(37):E5179-E5188. 2015
(11) Song K, Suenaga T, Harper WF Jr, Hori T, Riya S, Hosomi M, Terada
A. Effects of aeration and internal recycle flow on nitrous oxide emissions
from a modified Ludzak-Ettinger process fed with glycerol. Environ Sci Pollut Res Int. 22(24):19562-19570. 2015
(10) Inagaki F, Hinrichs KU, Kubo Y, Bowles MW, Heuer VB, Hong WL, Hoshino
T, Ijiri A, Imachi H, Ito M, Kaneko M, Lever MA, Lin YS, Methé BA, Morita
S, Morono Y, Tanikawa W, Bihan M, Bowden SA, Elvert M, Glombitza C, Gross
D, Harrington GJ, Hori T, Li K, Limmer D, Liu CH, Murayama M, Ohkouchi
N, Ono S, Park YS, Phillips SC, Prieto-Mollar X, Purkey M, Riedinger N,
Sanada Y, Sauvage J, Snyder G, Susilawati R, Takano Y, Tasumi E, Terada
T, Tomaru H, Trembath-Reichert E, Wang DT, Yamada Y. Exploring deep microbial
life in coal-bearing sediment down to ~2.5 km below the ocean floor. Science. 349(6246):420-424. 2015
(9) Navarro RR, Aoyagi T, Kimura M, Itoh H, Sato Y, Kikuchi Y, Ogata A,
Hori T. High-resolution dynamics of microbial communities during dissimilatory
selenate reduction in anoxic soil. Environ Sci Technol. 49(13):7684-7691. 2015
(8) Song K, Harper WF Jr, Hori T, Riya S, Hosomi M, Terada A. Impact of
carbon sources on nitrous oxide emission and microbial community structure
in an anoxic/oxic activated sludge system. Clean Technol Envir. 17(8):2375-2385. 2015
(7) Aoyagi T, Kimura M, Yamada N, Navarro RR, Itoh H, Ogata A, Sakoda A,
Katayama Y, Takasaki M, Hori T. Dynamic transition of chemolithotrophic
sulfur-oxidizing bacteria in response to amendment with nitrate in deposited
marine sediments. Front Microbiol. 6:426. 2015
(6) Hori T, Aoyagi T, Itoh H, Narihiro T, Oikawa A, Suzuki K, Ogata A,
Friedrich MW, Conrad R, Kamagata Y. Isolation of microorganisms involved
in reduction of crystalline iron(III) oxides in natural environments. Front Microbiol. 6:386. 2015
(5) Aoyagi T, Hanada S, Itoh H, Sato Y, Ogata A, Friedrich MW, Kikuchi
Y, Hori T. Ultra-high-sensitivity stable-isotope probing of rRNA by high-throughput
sequencing of isopycnic centrifugation gradients. Environ Microbiol Rep. 7(2):282-287. 2015
(4) Tago K, Okubo T, Itoh H, Kikuchi Y, Hori T, Sato Y, Nagayama A, Hayashi
K, Ikeda S, Hayatsu M. Insecticide-degrading Burkholderia symbionts of
stinkbug naturally occupy various environments of sugarcane fields in a
southeast island of Japan. Microbes Environ. 30(1):29-36. 2015
(3) Tago K, Okubo T, Shimomura Y, Kikuchi Y, Hori T, Nagayama A, Hayatsu
M. Environmental factors shaping the community structure of ammonia-oxidizing
bacteria and archaea in sugarcane field soil. Microbes Environ. 30(1):21-28. 2015
(2) Hori T, Haruta S, Sasaki D, Hanajima D, Ueno Y, Ogata A, Ishii M, Igarashi
Y. Reorganization of the bacterial and archaeal populations associated
with organic loading conditions in a thermophilic anaerobic digester. J Biosci Bioeng. 119(3):337-344. 2015
(1) Inaba T, Oura H, Morinaga K, Toyofuku M, Nomura N. The Pseudomonas Quinolone Signal Inhibits Biofilm Development of Streptococcus mutans. Microbes Environ. 2015
ISO18191:2015 Water quality -- Determination of pHt in sea water -- Method using the indicator dye m-cresol purple, 原田晃、鶴島修夫他
寺田昭彦，堀知行，久保田健吾，栗栖太，春日郁朗，金田一智規，伊藤司．
「水処理システムの微生物群の全容を診る解析技術の進展」水環境学会誌, 45 (3), 91-105. 2022.
竹村文男，村上拓郎，栄部比夏里，天満則夫，長尾二郎，愛澤秀信，牧野良次. (2022) 産業技術総合研究所における研究開発のあゆみ, 電気評論,
107 (2), 12-23. 2022.
鈴村昌弘 海洋とリンの枯渇問題. OceanNewsLetter, No. 501, 4-5. 2021
青柳智，七尾舞，森喜彦，堀知行. 掘削ずりに棲息する微生物を利用したセレン不溶化技術の開発．環境浄化技術，20(6), 7-12. 2021
古谷研，鈴村昌弘．「国連海洋科学の10年」―One Oceanに向けて:海洋資源の持続的利用．学術の動向, 26 (1), 42-47, 2021.
鶴島修夫 海洋における二酸化炭素の動態とpH測定．色材協会誌, 93(12), 379-383, 2020
稲葉知大,堀知行．膜分離活性汚泥法（MBR）の膜閉塞に関与するバイオフィルムの実体解明〜MBRの高活性維持管理技術に向けて〜．化学装置, 2020
児玉昌也, 古谷博秀, 大谷謙仁, 前田哲彦, 豊島安健, 百合野真司, 奥村元, 天満則夫, 鈴木清史, 五百蔵勉, 山崎眞一, 兼保直樹,
鈴村昌弘, 村山昌平, 恒見清孝, 小野恭子．(2020) 産業技術総合研究所における研究開発のあゆみ．電気評論, 105(2), 18-31.
2020
青柳智, 森下史朗, 杉山豊, 市川大輔, 眞弓大介, 菊池義智, 尾形敦, 羽部浩, 村岡健次, 堀知行．高感度Stable Isotope Probing (SIP)による廃水処理槽内の1,4-ジオキサン分解菌の同定．環境と測定技術 46(2): 17-27. 2019
青柳智, 羽部浩, 尾形敦, 堀知行．廃水中の難分解性1,4-ジオキサンを分解する未知微生物群の動態．バイオサイエンスとインダストリー（B&I）, 77(1):53-55. 2019
Kuwae T, Kanda J, Kubo A, Nakajima F, Ogawa H, Sohma A, Suzumura M. “CO2 Uptake in the Shallow Coastal Ecosystems Affected by Anthropogenic Impacts: Carbon Dynamics, Policy, and Implementation” in Blue Carbon in Shallow Coastal Ecosystems, Eds. Kuwae T and Hori M, pp. 295-319, Springer, 2019. ResearchGate
鈴村昌弘 リンの地球科学 地球上での存在 海洋，『リンの事典』大竹久夫他編．38-39, 朝倉出版，2017
鈴村昌弘 リンの地球科学 生物圏での循環 貧栄養海域生態系，『リンの事典』大竹久夫他編，pp 52-53, 朝倉出版，2017
鈴村昌弘，塚崎あゆみ，橋濱史典，佐藤光秀，梅澤有．貧栄養海域のリンの循環過程と解析手法，地球環境20(１)，pp77-88, 2015
梅澤有，鈴村昌弘，塚崎あゆみ，尾崎健史，牟田直樹，山口聖．沿岸生態系のリン循環，地球環境20(１)，pp 63-76, 2015
青柳智 沿岸域海底堆積物中の物質循環における硝酸の役割, 日本生物工学会誌93: 754. 2015
青柳智,堀知行．未培養微生物の代謝活性を検出する超高感度安定同位体プローブ法の開発, バイオサイエンスとインダストリー（B&I） 73(3):p225-227.
2015