Dr. Masahiro Suzumura (Senior Researcher) ▶(Personal Page)
Dr. Nobuo Tsurushima (Senior Researcher) ▶(ResearchGate)
Dr. Tomoyuki Hori (Chief Senior Researcher)
▶(Researchmap) ▶(ResearchGate) ▶(Google Scholar)
Dr. Ayumi
Tsukasaki (Senior Researcher)
Dr. Tomohiro Inaba (Senior Researcher)
▶(Researchmap) ▶(Google Scholar)
Dr. Tomo Aoyagi (Senior Researcher)
▶(ResearchGate) ▶(Google Scholar)
(10) Kamezaki K, Maeda T, Ishidoya S, Tsukasaki
A, Murayama S, Kaneyasu N. Low blank sampling method for measurement of the
nitrogen isotopic composition of atmospheric NOx. Plos One.19(2):
e0298539. 2024
(9) Oba K, Suenaga T, Yasuda S, Kuroiwa M, Hori T, Lackner
S, Terada A. Quest for Nitrous Oxide-reducing Bacteria Present in an Anammox
Biofilm Fed with Nitrous Oxide. Microbes Environ. 39(1): ME23106. 2024
(8) Honjo M, Suzuki K, Katai J, Tashiro Y, Aoyagi T, Hori
T, Okada T, Saito Y, Futamata H. Stable States of a Microbial Community Are
Formed by Dynamic Metabolic Networks with Members Functioning to Achieve Both
Robustness and Plasticity. Microbes Environ. 39(1):
ME23091. 2024
(7) Miyajima Y, Aoyagi T, Yoshioka H, Hori T, Takahashi HA,
Tanaka M, Tsukasaki A, Goto S, Suzumura M. Impact of Concurrent
aerobic-anaerobic Methanotrophy on Methane Emission from Marine Sediments in
Gas Hydrate Area. Environ Sci Technol. 58(11): 4979–4988.
2024
(6) Yoshino H, Van Phan H, Mori N, Ohkuma N, Kawakami M, Nihei M, Hashimoto
S, Wakabayashi K, Hori T, Terada A. Anti-biofouling performance and
microbial communities of an integrated fixed-film activated sludge membrane
bioreactor with a fibrous carrier material: Pilot-scale demonstration.
Sci Total Environ. 918: 170291. 2024
(5) Duan J, Kitamura K, Tsukamoto H, Van Phan H, Oba
K, Hori T, Fujiwara T, Terada A. Enhanced granulation of activated sludge
in an airlift reactor for organic carbon removal and ammonia retention from
industrial fermentation wastewater: A comparative study. Water Res.
251: 121091. 2024
(4) Duan J, Oba K, Hori T, Fujiwara T, Lackner S, Terada A.
Modeling of an aerobic granular sludge process for ammonia retention: Insights
into granule size, dissolved oxygen concentration, and solids retention time. J
Environ Chem Eng. 12(2): 112245. 2024
(3) Sato Y, Hamai H, Masaki Y, Aoyagi T, Inaba T, Hori T, Habe
H. Replacing rice bran with low-molecular-weight substrates affected the
performance and metabolic feature of sulfate-reducing bioreactors treating acid
mine drainage. J Environ Chem Eng.
12(2): 112118. 2024
(2) Maeda A, Nishijima M, Iguchi A, Ota Y, Suzumura M, Suzuki A.
Environmental DNA metabarcoding of foraminifera for biological monitoring of
bottom water and sediments on the Takuyo-Daigo Seamount in the northwestern
Pacific. Front Mar Sci. 10, 1–18. 2024
(1) Ota Y, Iguchi A, Nishijima M, Mukai R, Suzumura M, Yoshioka
H, Suzuki A, Tsukasaki A, Aoyagi T, Hori T. Methane diffusion affects
characteristics of benthic communities in and around microbial mat-covered
sediments in the northeastern Japan sea. Chemosphere. 349:
140964. 2024
2023
(19) Miyajima Y, Araoka D, Yoshimura T, Ota Y,
Suzuki A, Yoshioka H, Suzumura M, Smrzka D, Peckmann J, Bohrmann G. Lithium
isotope systematics of methane-seep carbonates as an archive of fluid origins
and flow rates. Geochim Cosmochim Acta. 361:152–170. 2023
(18) Zhou X, Fujiwara T, Hidaka T, Nishimura F, Nakanishi T,
Terada A, Hori T. Evaluation of nitrous oxide emission during ammonia
retention from simulated industrial wastewater by microaerobic activated sludge
process. Water Res. 247: 120780. 2023
(17) Gonzales RR, Nakagawa K, Kumagai K, Hasegawa S, Matsuoka A,
Li Z, Mai Z, Yoshioka T, Hori T, Matsuyama H. Hybrid osmotically assisted
reverse osmosis and reverse osmosis (OARO-RO) process for minimal liquid
discharge of high strength nitrogenous wastewater and enrichment of ammoniacal
nitrogen. Water Res. 246: 120716. 2023
(16) Inaba T, Hori T, Tsuchiya M, Ihara H, Uchida E, Gu JD,
Katayama Y. Microscopic evidence of sandstone deterioration and damage by fungi
isolated from the Angkor monuments in simulation experiments. Sci Total
Environ. 20 (896): 165265. 2023
(15) Sato Y, Miwa T, Inaba T, Akachi T, Tanaka E, Hori T,
Murofushi K, Takagi H, Futamata H, Aoyagi T, Habe H. Microbially produced
fertilizer provides rhizobacteria to hydroponic tomato roots by forming
beneficial biofilms. Appl Microbiol Biotechnol.
107(23):7365-7374. 2023
(14) Inaba T, Aizawa H, Aoyagi T, Sato Y, Hori T, Nishimura T,
Habe H. Startup performance and microbial composition of a pilot-scale rapid
sand filter for the treatment of manganese-containing mine water. Chemosphere.
343:140229. 2023
(13) Tsukamoto H, Phan HV, Suenaga T, Yasuda S, Kuroiwa M, Riya S, Ogata A, Hori T, Terada A. Microaerophilic Activated Sludge System for Ammonia Retention toward Recovery from High-Strength Nitrogenous Wastewater: Performance and Microbial Communities. Envrion Sci Technol. 57(37): 13874-13886. 2023
(12) Kuroda K, Tomita S, Kurashita H, Hatamoto M, Yamaguchi T, Hori T,
Aoyagi T, Sato Y, Inaba T, Habe H, Tamaki H, Hagihara Y, Tamura T, Narihiro
T. Metabolic implications for predatory and parasitic bacterial lineages
in activated sludge wastewater treatment systems. Water Res X. 20: 100196. 2023
(11) Shirane S, Momma N, Usami T, Suzuki C, Hori T, Aoyagi T, Amachi S.
Fungicidal Activity of Caproate Produced by Clostridium sp. strain E801, a Bacterium Isolated from Cocopeat Medium Subjected to
Anaerobic Soil Disinfestation. Agron. 13: 747. 2023
(10) Nouzaki K, Tanaka R, Sato Y, Inaba T, Aoyagi T, Hori T, Yanagishita
H, Habe H. Evaluating the Optimal Oil Concentrations in the Startup Performance
of a Membrane Bioreactor Treating Oily Noodle-soup Wastewater. J Oleo Sci. 72: 357-367. 2023
(9) Duan J, Phan HV, Tsukamoto H, Hori T, Terada A. Microaerophilic activated sludge system for ammonia retention from high-strength nitrogenous wastewater: Biokinetics and mathematical modeling. Biochem Eng J. 191: 108790. 2023
(8) Inaba T, Yamaguchi M, Taniguchi A, Sato Y, Aoyagi T, Hori T, Inoue H, Fujita M, Iwata M, Iwata Y, Habe H. Evaluation of dye decolorization using anaerobic granular sludge from an expanded granular sludge bed based on spectrometric and microbiome analyses. J Gen Appl Microbiol. 68: 242-247. 2023
(7) Kise H, Iguchi A, Saito N, Yoshioka Y, Uda K, Suzuki T, Nagano AJ,
Suzuki A, Iwasaki N. Genetic population structure of the precious coral
Corallium japonicum in the Northwest Pacific. Front Mar Sci. in press. 2023
(6) Kise H, Santos MEA, Fourreau CJL, Iguchi A, Goto R, Reimer, JD. Evolutionary patterns of host switching, lifestyle mode, and the diversification history in symbiotic zoantharians. Mol Phylogenet Evol. 182: 107732. 2023
(5) Kise H, Nishijima M, Iguchi A, Minatoya J, Yokooka H, Ise Y, Suzuki
A. A new hexactinellid-sponge-associated zoantharian (Porifera, Hexasterophora)
from the northwestern Pacific Ocean. ZooKeys.1156: 71-85. 2023
(4) Kise H, Reimer JD, Pirro S. The Complete Genome Sequences of 7 Species
of Epizoanthus (Epizoanthidae, Zoantharia, Hexacorallia, Cnidaria). Biodiversity genomes. 2023
(3) Santos MEA, Kise H, Fourreau CJL, Poliseno A, Pirro S, Reimer JD. The Complete Genome Sequences of 13 Species of Brachycnemina (Cnidaria, Hexacorallia, Anthozoa, Zoantharia). Biodiversity Genomes. 2023
(2) Kise H, Iguchi A, Ikegami T, Onishi Y, Goto K, Tanaka Y, Washburn WT,
Nishijima M, Kunishima T, Okamoto N, Suzuki, A. Genetic population structures
of common scavenging species near hydrothermal vents in the Okinawa Trough. Sci Rep. 13: 2348. 2023
(1) Richards ZT, Kise H, West KM. The complete mitochondrial genome of
the invasive cyanobacteriosponge Terpios hoshinota (Demospongiae, Suberitida,
Suberitidae). Mitochondrial DNA B: Resour. 8: 319-323. 2023
2022
(7) Ota Y, Suzumura M, Tsukasaki A, Suzuki A, Yamaoka K, Asada M, Satoh
M. Anaerobic oxidation of methane and trace-element geochemistry in microbial
mat-covered sediments related to methane seepage, northeastern Japan Sea.
Chem Geol. 611: 121093. 2022
(6) Inaba T, Goto T, Aoyagi T, Hori T, Aoki K, Sato Y, Ono N, Furihata
T, Habe H, Ogino S, Ogata A. Biological treatment of ironworks wastewater
with high-concentration nitrate using a nitrogen gas aerated membrane bioreactor. Chem Eng J 450: 138366. 2022
(5) Zhou Y, Toyoda R, Suenaga T, Aoyagi T, Hori T, Terada A. Low nitrous
oxide concentration and spatial microbial community transition across an
urban river affected by treated sewage. Water Res. 216: 118276. 2022
(4) Sato Y, Hamai T, Hori T, Aoyagi T, Inaba T, Hayashi K, Kobayashi M, Sakata
T, Habe H. Optimal start-up conditions for the efficient treatment of acid mine
drainage using sulfate-reducing bioreactors based on physicochemical and
microbiome analyses. J Hazard Mater. 423: 127089. 2022
(3) Guo Y, Ihara H, Aoyagi T, Hori T, Katayama Y. Draft Genome Sequences of Sulfurovum
spp. TSL1 and TSL6, Two Sulfur-Oxidizing Bacteria Isolated from Marine
Sediment. Microbiol Resour Announc. 11: e00922-21. 2022
(2) Ota Y, Kawahata H, Kuroda J, Suzuki A, Abe-Ouchi, A, Jimenez-Espejo, FJ. Millennial-scale
variability of Indian summer monsoon constrained by the western Bay of Bengal
sediments: Implication from geochemical proxies of sea surface salinity and
river runoff. Glob Planet Change. 208: 103719. 2022
(1) Ota Y, Suzumura M, Tsukasaki A, Suzuki A, Seike K, Minatoya J. Sediment
accumulation rates and particle mixing at northwestern Pacific seamounts. J
Mar Syst. 229: 103719. 2022
2021
(11) Guo
Y, Aoyagi T, Hori T. Comparative insights into genome signatures of ferric iron
oxide-and anode-stimulated Desulfuromonas spp. strains. BMC
genomics. 22: 475. 2021
(10) Sato Y, Jang S, Takeshita K, Itoh H, Koike H, Tago K, Hayatsu M, Hori T,
Kikuchi Y. Insecticide resistance by a host-symbiont reciprocal detoxification.
Nat commun. 12: 6432. 2021
(9) Shimoji H, Itoh H, Matsuura Y, Yamashita R, Hori T, Hojo MK, Kikuchi Y.
Worker-dependent gut symbiosis in an ant. ISME Commun. 1: 60.
2021
(8) Suenaga T, OtaT, Oba K, Usui K, Sako T, Hori T, Riya S, Hosomi M, Chandran K, Lackner S, Smets FB, Terada A. Combination of 15N Tracer and
Microbial Analyses Discloses N2O Sink Potential of the Anammox
Community. Envrion Sci Technol. 55: 9231-9242. 2021
(7) Guo Y, Aoyagi T, Hori T. Draft Genome Sequences of the Ferric Iron-Reducing
Geobacter sp. Strains AOG1 and AOG2, Isolated from Enrichment Cultures
on Crystalline Iron(III) Oxides. Microbiol Resour Announc. 10:
e00913-21. 2021
(6) Aoyagi T, Katayama Y, Aizawa H, Takasaki M, Hori T. Nitrate-driven trophic
association of sulfur-cycling microorganisms in tsunami-deposited marine
sediment revealed by high-sensitivity 13C-bicarbonate probing. Envrion
Sci Technol. 55: 8410-8421. 2021
(5) Mahmood M, Taki S, Nakai S, Gotoh T, Nishijima W, Umehara A, Aoyagi T, Sato
Y, Hori T, Katayama Y, Hajdu-Rahkama R, Puhakka A J. Increase in sedimentary
organic carbon with a change from hypoxic to oxic conditions. Mar
Pollut Bull. 168:112397. 2021
(4) Sato Y, Tanaka E, Hori T, Futamata H, Murofushi K, Takagi H, Akachi T, Miwa
T, Inaba T, Aoyagi T, Habe H. Efficient conversion of organic nitrogenous
wastewater to nitrate solution driven by comammox Nitrospira. Water
Res. 197:117088. 2021
(3) Ihara H, Kumagai A, Hori T, Nanba K, Aoyagi T, Takasaki M, Katayama Y.
Direct comparison of bacterial communities in soils contaminated with different
levels of radioactive cesium from the first Fukushima nuclear power plant
accident. Sci Total Environ. 756: 143844. 2021
(2) Aoyagi T, Mori Y, Nanao M, Matsuyama Y, Sato Y, Inaba T, Aizawa H, Hayakawa
T, Moriya M, Higo Y, Habe H, Hori T. Effective Se reduction by
lactate-stimulated indigenous microbial communities in excavated waste
rocks. J Hazard Mater. 403:123908. 2021.
(1) Ota Y, Suzuki A, Yamaoka K, Nagao M, Tanaka Y, Irizuki T, Fujiwara O,
Yoshioka K, Kawagata S, Kawano S, Nishimura O. Geochemical distribution of
heavy metal elements and potential ecological risk assessment of Matsushima Bay
sediments during 2012–2016. Sci Total Env.
751: 141825. 2021
2020
(22)
Yoshino H, Hosoe A, Hori T, Hosomi M, Terada A. Excess Sludge Reduction Using a
High-pressure Jet Device via a Modified Ludzack-Ettinger Process: Performance
and Microbial Communities. J Water Environ Technol. 18(4):238-253.
2020
(21) Yamaoka, K., A. Suzuki, Y. Tanaka, M. Suzumura, A. Tsukasaki, A.
Shimamoto, T. Fukuhara, S. Kato, N. Okamoto and Y. Igarashi. Late summer peak
and scavenging-dominant metal fluxes in particulate export near a seamount in
the western North Pacific subtropical gyre. Frontiers Earth Sci. 2020
(20) Tanaka R, Nouzaki K, Navarro RR, Inaba T, Aoyagi T, Sato Y, Ogata A,
Yanagishita H, Hori T, Habe H. Activated sludge microbiome in a membrane
bioreactor for treating Ramen noodle-soup wastewater. J Gen Appl
Microbiol. 66(6): 339-343. 2020
(19) Morono Y, Ito M, Hoshino T, Terada T, Hori T, Ikehara M, D'Hondt S,
Inagaki F. Aerobic microbial life persists in oxic marine sediment as old as
101.5 million years. Nat Commun. 11(1):3626. 2020. 2020
(18) Seike K, Shirai K, Kubota K, Ota Y, Sassa S. Does trace fossil size correspond
with burrower population density? An example from the modern counterpart of the
trace fossil Bichordites. Palaeogeogr Palaeoclimatol Palaeoecol.
557:109946. 2020
(17) Kajita H, Ota Y, Yoshimura T, Araoka D, Manaka T, Ziyu O, Iwasaki S,
Yanase T, Inamura A, Uchida E, Zheng H, Yang Q, Wang K, Suzuki A, Kawahata H.
Seasonal and Spatial Variations of Chemical Weathering in the Mekong Basin:
From the Headwaters to the Lower Reaches. Aquat Geochem.
26:137–159. 2020
(16) Habe H, Sato Y, Aoyagi T, Inaba T, Hori T, Hamai T, Hayashi K, Kobayashi
M, Sakata T, Sato N. Design, application, and microbiome of sulfate-reducing
bioreactors for treatment of mining-influenced water. Appl Microbiol
Biotechnol. 104(16):6893-6903. 2020
(15) Yasuda S, Toyoda R, Agrawal S, Suenaga T, Riya S, Hori T, Lackner S,
Hosomi M, Terada A. Exploration and enrichment of methane-oxidizing bacteria
derived from a rice paddy field emitting highly concentrated methane. J
Biosci Bioeng. 130(3):311-318. 2020
(14) Inaba T, Su T, Aoyagi T, Aizawa H, Sato Y, Suh C, Lee JH, Hori T, Ogata A,
Habe H. Microbial community in an anaerobic membrane bioreactor and its
performance in treating organic solid waste under controlled and deteriorated
conditions. J Environ Manage. 269:110786. 2020
(13) Inaba T, Aoyagi T, Hori T, Charfi A, Suh C, Lee JH, Sato Y, Ogata A,
Aizawa H, Habe H. Clarifying prokaryotic and eukaryotic biofilm microbiomes in
anaerobic membrane bioreactor by non-destructive microscopy and high-throughput
sequencing. Chemosphere. 254:126810. 2020
(12) Yoshino H, Hori T, Hosomi M, Terada A. Identifying prokaryotes and
eukaryotes disintegrated by a high-pressure jet device for excess activated
sludge reduction. Biochem Eng J. 157, 107495. 2020
(11) Aoyagi T, Inaba T, Aizawa H, Mayumi D, Sakata S, Charfi A, Suh C, Lee JH,
Sato Y, Ogata A, Habe H, Hori T. Unexpected diversity of acetate degraders in
anaerobic membrane bioreactor treating organic solid waste revealed by
high-sensitivity stable isotope probing. Water Res.
176:115750. 2020
(10) Guo Y, Aoyagi T, Inaba T, Sato Y, Habe H, Hori T. Complete Genome Sequence
of Desulfuromonas sp. Strain AOP6, an Iron(III) Reducer Isolated from
Subseafloor Sediment. Microbiol Resour Announc. 9(12):e01325-19.
2020
(9) Fujioka T, Aizawa H, Kodamatani H, Fouling substances causing variable
rejection of a small and uncharged trace organic chemical by reverse osmosis
membranes. Environ Technol Innov. 17, 100576. 2020
(8) Sato Y, Zhao YJ, Hori T, Aoyagi T, Inaba T, Aizawa H, Ogata A, Habe H.
Transition of microbial community structures after development of membrane
fouling in membrane bioreactors (MBRs). AMB Express. 10(1):18.
2020
(7) Noda K, Aizawa H, Marumoto K, Basic Detection Characteristics of Quartz
Crystal Microbalance-based Method of Determination of Mercury. Sens
Mater. 32(6):1133. 2020
(6) Aizawa H, Kusakari SI, Yamada K, Noda K, Habe H, Development of Organic Gas
Sensor Using Quartz Crystal Microbalance Coated with Plasma-polymerized
Films. Sens Mater. 32(3):1123. 2020
(5) Navarro RR, Otsuka Y, Matsuo K, Sasaki K, Sasaki K, Hori T, Habe H,
Nakamura M, Nakashimada Y, Kimbara K, Kato J. Combined simultaneous enzymatic
saccharification and comminution (SESC) and anaerobic digestion for sustainable
biomethane generation from wood lignocellulose and the biochemical
characterization of residual sludge solid. Bioresour Technol.
300:122622. 2020
(4) Inaba T, Obana N, Habe H, Nomura N. Biofilm Formation by Streptococcus
mutans is Enhanced by Indole via the Quorum Sensing Pathway. Microbes
Environ. 2020
(3) Inaba T, Aoyagi T, Hori T, Charfi A, Suh C, Lee JH, Sato Y, Ogata A, Aizawa
H, Habe H. Long-term acclimatization of sludge microbiome for treatment of
high-strength organic solid waste in anaerobic membrane bioreactor. Biochem
Eng J. 154:107461. 2020
(2) Furuichi Y, Yoshimoto S, Inaba T, Nomura N, Hori K. Process Description of
an Unconventional Biofilm Formation by Bacterial Cells Autoagglutinating
through Sticky, Long, and Peritrichate Nanofibers. Environ Sci
Technol. 2020
(1) Sato-Takabe Y, Hirose S, Hori T, Hanada S. Abundance and Spatial
Distribution of Aerobic Anoxygenic Phototrophic Bacteria in Tama River,
Japan. Water. 12(1):150. 2020
2019
(11)
Hanajima D, Aoyagi T, Hori T. Dead bacterial biomass-assimilating bacterial
populations in compost revealed by high-sensitivity stable isotope probing. Environ
Int. 133:105235. 2019
(10) Yamamura S, Kurasawa H, Kashiwabara Y, Hori T, Aoyagi T, Nakajima N,
Amachi S. Soil Microbial Communities Involved in Reductive Dissolution of
Arsenic from Arsenate-laden Minerals with Different Carbon Sources. Environ
Sci Technol. 53(21):12398-12406. 2019
(9) Suenaga T, Hori T, Riya S, Hosomi M, Smets BF, Terada A. Enrichment,
Isolation, and Characterization of High-Affinity N2O-Reducing Bacteria in a
Gas-Permeable Membrane Reactor. Environ Sci Technol.
53(20):12101-12112. 2019
(8) Habe H, Koike H, Sato Y, Iimura Y, Hori T, Kanno M, Kimura N, Kirimura K.
Identification and characterization of levulinyl-CoA synthetase from
Pseudomonas citronellolis, which differs phylogenetically from LvaE of
Pseudomonas putida. AMB Express. 9(1):127. 2019
(7) Sato Y, Hamai T, Hori T, Aoyagi T, Inaba T, Kobayashi M, Habe H, Sakata T.
Desulfosporosinus spp. were the most predominant sulfate-reducing bacteria in
pilot- and laboratory-scale passive bioreactors for acid mine drainage
treatment. Appl Microbiol Biotechnol. 103(18):7783-7793.
2019
(6) Ihara H, Hori T, Aoyagi T, Hosono H, Takasaki M, Katayama Y. Stratification
of Sulfur Species and Microbial Community in Launched Marine Sediment by an
Improved Sulfur-Fractionation Method and 16S rRNA Gene Sequencing. Microbes
Environ. 34(2):199-205. 2019
(5) Zhao YJ, Sato Y, Inaba T, Aoyagi T, Hori T, Habe H. Activated sludge
microbial communities of a chemical plant wastewater treatment facility with
high-strength bromide ions and aromatic substances. J Gen Appl
Microbiol. 65(2):106-110. 2019
(4) Sato Y, Hori T, Koike H, Navarro RR, Ogata A, Habe H. Transcriptome
analysis of activated sludge microbiomes reveals an unexpected role of minority
nitrifiers in carbon metabolism. Commun Biol. 2:179. 2019
(3) Aoyagi T, Kashiwabara Y, Kurasawa H, Amachi S, Nakajima N, Hori T, Yamamura
S. Draft Genome Sequence of a Novel Lactate-Fermenting Bacterial Strain of the
Family Sporomusaceae within the Class Negativicutes. Microbiol
Resour Announc. 8(10). 2019
(2) Narihiro T, Nobu KM, Hori T, Aoyagi T, Sato Y, Inaba T, Aizawa H, Tamaki H,
Habe H. Effects of the Wastewater Flow Rate on Interactions between the Genus
Nitrosomonas and Diverse Populations in an Activated Sludge Microbiome. Microbes
Environ. 34(1):89-94. 2019
(1) Song K, Sawayanagi K, Numano T, Taniichi Y, Kikuchi T, Takeda T, Kanou H,
Riya S, Hori T, Hosomi M, Terada A. High-rate partial nitrification of
semiconductor wastewater: Implications of online monitoring and microbial
community structure. Biochem Eng J. 143:34-40. 2019
2018
(11)
Inaba T, Hori T, Aizawa H, Sato Y, Ogata A, Habe H. Microbiomes and chemical
components of feed water and membrane-attached biofilm in reverse osmosis
system to treat membrane bioreactor effluents. Sci Rep.
8(1):16805. 2018
(10) Fujioka T, Hoang AT, Aizawa H, Ashiba H, Fujimaki M, Leddy M, Real-Time
Online Monitoring for Assessing Removal of Bacteria by Reverse Osmosis. Environ
Sci Technol Lett. 5(6):389. 2018
(9) Aoyagi T, Morishita F, Sugiyama Y, Ichikawa D, Mayumi D, Kikuchi Y, Ogata
A, Muraoka K, Habe H, Hori T. Identification of active and taxonomically
diverse 1,4-dioxane degraders in a full-scale activated sludge system by
high-sensitivity stable isotope probing. ISME J.
12(10):2376-2388. 2018
(8) Aoyagi T, Hamai T, Hori T, Sato Y, Kobayashi M, Sato Y, Inaba T, Ogata A,
Habe H, Sakata T. Microbial community analysis of sulfate-reducing passive
bioreactor for treating acid mine drainage under failure conditions after
long-term continuous operation. J Environ Chem Eng.
6(5):5795-5800. 2018
Inaba T, Sato Y, Koike H, Hori T, Kanno M, Kimura N, Kirimura K, Habe H. Draft
genome sequence of Pseudomonas citronelollis LA18T, a bacterium that use levulinic
acid. Microbiol Resour Announc. 7(5). 2018
(7) Suenaga T, Aoyagi T, Hosomi M, Hori T, Terada A. Draft Genome Sequence of
Azospira sp. Strain I13, a Nitrous Oxide-Reducing Bacterium Harboring Clade II
Type nosZ. Genome Announc. 6(20). 2018
(6) Miao J, Yin Q, Hori T, Aoyagi T, Habe H, Wu G. Nitrifiers activity and
community characteristics under stress conditions in partial nitrification
systems treating ammonium-rich wastewater. J Environ Sci.
73:1-8. 2018
(6) Itoh H, Hori T, Sato Y, Nagayama A, Tago K, Hayatsu M, Kikuchi Y. Infection
dynamics of insecticide-degrading symbionts from soil to insects in response to
insecticide spraying. ISME J. 12(3):909-920. 2018
(5) Meng L, Xie L, Kinh CT, Suenaga T, Hori T, Riya S, Terada A, Hosomi M.
Influence of feedstock-to-inoculum ratio on performance and microbial community
succession during solid-state thermophilic anaerobic co-digestion of pig urine
and rice straw. Bioresour Technol. 252:127-133. 2018
(4) Inaba T, Hori T, Sato Y, Aoyagi T, Hanajima D, Ogata A, Habe H. Eukaryotic
Microbiomes of Membrane-Attached Biofilms in Membrane Bioreactors Analyzed by
High-Throughput Sequencing and Microscopic Observations. Microbes
Environ. 33(1):98-101. 2018
(3) Yokota N, Watanabe Y, Tokutomi T, Kiyokawa T, Hori T, Ikeda D, Song K,
Hosomi M, Terada A. High-rate nitrogen removal from waste brine by marine
anammox bacteria in a pilot-scale UASB reactor. Appl Microbiol
Biotechnol. 102(3):1501-1512. 2018
(2) Inaba T, Hori T, Navarro RR, Ogata A, Hanajima D, Habe H. Revealing sludge
and biofilm microbiomes in membrane bioreactor treating piggery wastewater by
non-destructive microscopy and 16S rRNA gene sequencing. Chem Eng J.
331:75-83. 2018
(1) Sato Y, Hamai T, Hori T, Habe H, Kobayashi M, Sakata T. Year-round Performance
of a Passive Sulfate-reducing Bioreactor that Uses Rice Bran as an Organic
Carbon Source to Treat Acid Mine Drainage. Mine Water Environ.
37(3):586-594. 2018
2017
(10) Kinh
CT, Suenaga T, Hori T, Riya S, Hosomi M, Smets BF, Terada A. Counter-diffusion biofilms
have lower N2O emissions than co-diffusion biofilms during simultaneous
nitrification and denitrification: Insights from depth-profile analysis. Water
Res. 124:363-371. 2017
(9) Aoyagi T, Hamai T, Hori T, Sato Y, Kobayashi M, Sato Y, Inaba T, Ogata A,
Habe H, Sakata T. Hydraulic retention time and pH affect the performance and
microbial communities of passive bioreactors for treatment of acid mine
drainage. AMB Express. 7:142. 2017
(8) Aoyagi T, Koike H, Morita T, Sato Y, Habe H, Hori T. Draft Genome Sequence
of Geobacter pelophilus Strain Dfr2, a Ferric Iron-Reducing Bacterium. Genome
Announc. 5(24). 2017
(7) Yoshino H, Suenaga T, Fujii T, Hori T, Terada A, Hosomi M. Efficacy of a
high-pressure jet device for excess sludge reduction in a conventional
activated sludge process: Pilot-scale demonstration. Chem Eng J.
326:78-86. 2017
(6) Fujioka T, Kodamatani H, Aizawa H, Gray S, Ishida KP, Nghiem LD, Role of
membrane fouling substances on the rejection of N-nitrosamines by reverse
osmosis. Water Res. 118:187. 2017
(5) Inaba T, Hori T, Aizawa H, Ogata A, Habe H. Architecture, component, and
microbiome of biofilm involved in the fouling of membrane bioreactors. NPJ
Biofilms Microbiomes. 3:5. 2017
(4) Fang J, Kato C, Runko GM, Nogi Y, Hori T, Li J, Morono Y, Inagaki F.
Predominance of Viable Spore-Forming Piezophilic Bacteria in High-Pressure
Enrichment Cultures from ~1.5 to 2.4 km-Deep Coal-Bearing Sediments below the
Ocean Floor. Front Microbiol. 8:137. 2017
(3) Ihara H, Hori T, Aoyagi T, Takasaki M, Katayama Y. Sulfur-Oxidizing
Bacteria Mediate Microbial Community Succession and Element Cycling in Launched
Marine Sediment. Front Microbiol. 8:152. 2017
(2) Habe H, Kondo S, Sato Y, Hori T, Kanno M, Kimura N, Koike H, Kirimura K.
Electrodialytic separation of levulinic acid catalytically synthesized from
woody biomass for use in microbial conversion. Biotechnol Prog.
33(2):448-453. 2017
(1) Kinh CT, Ahn J, Suenaga T, Sittivorakulpong N, Noophan P, Hori T, Riya S,
Hosomi M, Terada A. Free nitrous acid and pH determine the predominant
ammonia-oxidizing bacteria and amount of N2O in a partial nitrifying
reactor. Appl Microbiol Biotechnol. 101(4):1673-1683. 2017
2016
(14)
Kuwae T, Kanda J, Kubo A, Nakajima F, Ogawa H, Sohma A, Suzumura M. Blue Carbon
in human-dominated estuarine and shallow coastal systems. Ambio.
45:290-301.2016
(13) Tsukasaki A, Tsurushima N, Nakazato T, Huang Y, Tanimoto T, Suzumura M,
Nishijima W. Nutrient dynamics in core sediments of an artificial basal medium
prepared with steelmaking slag and dredged materials. J Oceanogr.
72(6):867-881.2016
(12) Sato Y, Hori T, Habe H, Ogata A. A preliminary diagnostic method for
membrane fouling using extracellular proteins secreted in pilot-scale membrane
bioreactors. J Environ Biotechnol. 16(1):65-68. 2016
(11) Navarro RR, Hori T, Sato Y, Tanaka R, Ogata A, Habe H. High susceptibility
of aerobic microbiota in membrane bioreactor (MBR) sludge towards olive oil as
revealed by high-throughput sequencing of 16S rRNA genes. J Environ
Chem Eng. 4(4):4392-4399. 2016
(10) Sato Y, Koike H, Kondo S, Hori T, Kanno M, Kimura N, Morita T, Kirimura K,
Habe H. Draft genome sequence of Burkholderia stabilis LA20W, a trehalose
producer that uses levulinic acid as a substrate. Genome announc.
4(4). 2016
(9) Sato Y, Hori T, Navarro RR, Naganawa R, Habe H, Ogata A. Effects of
organic-loading-rate reduction on sludge biomass and microbial community in a
deteriorated pilot-scale membrane bioreactor. Microbes Environ.
31(3):361-364. 2016
(8) Inagaki F, Hinrichs KU, Kubo Y, the IODP Expedition 337 Scientists. IODP
Expedition 337: Deep coalbed biosphere off Shimokita -microbial processes and
hydrocarbon system associated with deeply buried coalbed in the ocean. Sci
Dril. 21:17-28. 2016
(7) Sato Y, Hori T, Navarro RR, Habe H, Ogata A. Functional maintenance and
structural flexibility of microbial communities perturbed by simulated intense
rainfall in a pilot-scale membrane bioreactor. Appl Microbiol
Biotechnol. 100(14):6447-6456. 2016
(6) Navarro RR, Hori T, Inaba T, Matsuo K, Habe H, Ogata A. High-resolution
phylogenetic analysis of residual bacterial species of fouled membranes after
NaOCl cleaning. Water Res. 94:166-175. 2016
(5) Hoshino T, Kuratomi T, Morono Y, Hori T, Oiwane H, Kiyokawa S, Inagaki F.
Ecophysiology of Zetaproteobacteria associated with shallow hydrothermal
iron-oxyhydroxide deposits in Nagahama Bay of Satsuma Iwo-Jima, Japan. Front
Microbiol. 6:1554. 2016
(4) Sato Y, Hori T, Navarro RR, Habe H, Yanagishita H, Ogata A. Fine-scale
monitoring of shifts in microbial community composition after high organic
loading in a pilot-scale membrane bioreactor. J Biosci Bioeng. 121(5):550-556.
2016
(3) Yoshimune K, Yamamoto M, Aoyagi T, Yumoto I. High and Rapid L-lactic Acid
Production by Alkaliphilic Enterococcus sp. by Adding Wheat Bran
Hydrolysate. Ferment Technol. 6(1): 11000138. 2016
(2) Toyofuku M, Inaba T, Kiyokawa T, Obana N, Yawata Y, Nomura N. Environmental
factors that shape biofilm formation. Biosci Biotechnol Biochem.
2016
(1) Fouquet T, Aizawa H, Sato H, Taking MALDI SpiralTOF high-resolution mass
spectrometry and mass defect analysis to the next level with ethylene vinyl
acetate vinyl alcohol terpolymers. Rapid Commun. Mass Spectrom.,
30(15):1818-1822. 2016
2015
(17)
Tsukasaki A, Suzumura M, Lichtschlag A, Stahl H, James R H. Phosphorus behavior
in sediments during a sub-seabed CO2 controlled release experiment. Int
J Greenh Gas Con. 38:102-109. 2015
(16) Nishijima W, Tsukasaki A, Tanimoto T, Nagao M, Tsurushima N, Suzumura M.
Applicability of steel slag as a substrate in eelgrass (Zostera marina L.) beds
restoration in coastal Japan. Ecol Eng. 81:418-427. 2015
(15) Tsukasaki A, Suzumura M, Nishijima W. Fractionation of phosphorus in
steelmaking slags and aquatic particulate materials using a sequential
extraction technique. ISIJ Int. 55(1):183-189. 2015
(14) Takeshita K, Matsuura Y, Itoh H, Navarro R, Hori T, Sone T, Kamagata Y,
Mergaert P, Kikuchi Y. Burkholderia of plant-beneficial group are symbiotically
associated with bordered plant bugs (Heteroptera: Pyrrhocoroidea:
Largidae). Microbes Environ. 30(4):321-329. 2015
(13) Sato Y, Hori T, Navarro RR, Habe H, Ogata A. Effect of a microbiota activator on accumulated ammonium and microbial community structure in a pilot-scale membrane bioreactor. J Gen Appl Microbiol. 61(4):132-138. 2015
(12) Ohbayashi T, Takeshita K, Kitagawa W, Nikoh N, Koga R, Meng XY, Tago K,
Hori T, Hayatsu M, Asano K, Kamagata Y, Lee BL, Fukatsu T, Kikuchi Y. Insect’s intestinal organ for symbiont sorting. Proc Natl
Acad Sci USA. 112(37):E5179-E5188. 2015
(11) Song K, Suenaga T, Harper WF Jr, Hori T, Riya S, Hosomi M, Terada A.
Effects of aeration and internal recycle flow on nitrous oxide emissions from a
modified Ludzak-Ettinger process fed with glycerol. Environ Sci
Pollut Res Int. 22(24):19562-19570. 2015
(10) Inagaki F, Hinrichs KU, Kubo Y, Bowles MW, Heuer VB, Hong WL, Hoshino T,
Ijiri A, Imachi H, Ito M, Kaneko M, Lever MA, Lin YS, Methé BA, Morita S,
Morono Y, Tanikawa W, Bihan M, Bowden SA, Elvert M, Glombitza C, Gross D,
Harrington GJ, Hori T, Li K, Limmer D, Liu CH, Murayama M, Ohkouchi N, Ono S,
Park YS, Phillips SC, Prieto-Mollar X, Purkey M, Riedinger N, Sanada Y, Sauvage
J, Snyder G, Susilawati R, Takano Y, Tasumi E, Terada T, Tomaru H,
Trembath-Reichert E, Wang DT, Yamada Y. Exploring deep microbial life in
coal-bearing sediment down to ~2.5 km below the ocean floor. Science.
349(6246):420-424. 2015
(9) Navarro RR, Aoyagi T, Kimura M, Itoh H, Sato Y, Kikuchi Y, Ogata A, Hori T.
High-resolution dynamics of microbial communities during dissimilatory selenate
reduction in anoxic soil. Environ Sci Technol. 49(13):7684-7691. 2015
(8) Song K, Harper WF Jr, Hori T, Riya S, Hosomi M, Terada A. Impact of carbon
sources on nitrous oxide emission and microbial community structure in an
anoxic/oxic activated sludge system. Clean Technol Envir. 17(8):2375-2385.
2015
(7) Aoyagi T, Kimura M, Yamada N, Navarro RR, Itoh H, Ogata A, Sakoda A,
Katayama Y, Takasaki M, Hori T. Dynamic transition of chemolithotrophic
sulfur-oxidizing bacteria in response to amendment with nitrate in deposited
marine sediments. Front Microbiol. 6:426. 2015
(6) Hori T, Aoyagi T, Itoh H, Narihiro T, Oikawa A, Suzuki K, Ogata A,
Friedrich MW, Conrad R, Kamagata Y. Isolation of microorganisms involved in
reduction of crystalline iron(III) oxides in natural environments. Front
Microbiol. 6:386. 2015
(5) Aoyagi T, Hanada S, Itoh H, Sato Y, Ogata A, Friedrich MW, Kikuchi Y, Hori
T. Ultra-high-sensitivity stable-isotope probing of rRNA by high-throughput
sequencing of isopycnic centrifugation gradients. Environ Microbiol Rep.
7(2):282-287. 2015
(4) Tago K, Okubo T, Itoh H, Kikuchi Y, Hori T, Sato Y, Nagayama A, Hayashi K,
Ikeda S, Hayatsu M. Insecticide-degrading Burkholderia symbionts of stinkbug
naturally occupy various environments of sugarcane fields in a southeast island
of Japan. Microbes Environ. 30(1):29-36. 2015
(3) Tago K, Okubo T, Shimomura Y, Kikuchi Y, Hori T, Nagayama A, Hayatsu M.
Environmental factors shaping the community structure of ammonia-oxidizing
bacteria and archaea in sugarcane field soil. Microbes Environ.
30(1):21-28. 2015
(2) Hori T, Haruta S, Sasaki D, Hanajima D, Ueno Y, Ogata A, Ishii M, Igarashi
Y. Reorganization of the bacterial and archaeal populations associated with
organic loading conditions in a thermophilic anaerobic digester. J
Biosci Bioeng. 119(3):337-344. 2015
(1) Inaba T, Oura H, Morinaga K, Toyofuku M, Nomura N. The Pseudomonas
Quinolone Signal Inhibits Biofilm Development of Streptococcus mutans. Microbes
Environ. 2015