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2026

  • Giron, LB; Borjabad, A; Hadas, E; Granche, J; Marques de Menezes, EG; Premeaux, TA; He, H; Yeung, ST; Singh, S; Friday, C; Glover, J; Balboa, E; Dopkin, D; Burrows, M; Secreto, A; Skuli, N; Tateno, H; Denton, PW; Palella, F; Corley, MJ; Ndhlovu, LC; Norris, PJ; Tassiopoulos, K; Volsky, DJ; Abdel-Mohsen, M.
    Inhibiting glycan degradation prevents HIV-induced inflammaging and cognitive impairment.
    Med (New York, N.Y.). 2026 Jun 5:101175. doi:10.1016/j.medj.2026.101175
  • Hayashi, Y; Matsumoto, J; Sumaru, K.
    Micropatterned neural induction with heat-inactivated extracellular matrix protein by on-demand high-speed laser.
    Regenerative therapy. 2026 May 30;33:101143. doi:10.1016/j.reth.2026.101143
  • Oishi, K; Suzuki, N; Takei, H; Zhuang, H; Ishikawa, M.
    Chronic low-dose oral methylglyoxal intake is associated with delayed circadian sleep timing and altered gut microbiota in mice.
    Neuroscience letters. 2026 May 29:882:138644. doi:10.1016/j.neulet.2026.138644
  • Shimose, D; Ozaki, K; Kuriyama, R; Ikemoto, Y; Mio, K; Sasaki, YC; Arai, T; Tsuda, S; Shinkai, Y; Kuramochi, M.
    Hyperactive ice-binding proteins stabilize cell membranes and improve resistance to dehydration stress in Caenorhabditis elegans.
    FEBS open bio. 2026 May 21. doi:10.1002/2211-5463.70274
  • Hasegawa, K; Hama, N; Amemiya, M; Zeng, C; Ito, Y; Suzuki, S; Nakamura, K; Kondo, J; Takeda, C; Kurihara, Y; Ikeda, K; Fujita, Y; Okada, Y; Toyoda, A; Hamada, M; Kuwako, KI.
    Age-related decline in nuclear envelope LINC complex drives neuronal aging via axon initial segment dysfunction.
    EMBO reports. 2026 May 22. doi:10.1038/s44319-026-00786-5
  • Naruse, Y; Fujii, M; Nagai, K; Hiruta, R; Sakagami, T; Kobayashi, T; Takahashi, K; Iijima, J; Suzuki, H; Hattori, K; Kanai, K; Oka, Y; Hashimoto, Y; Koriyama, S; Saito, T; Muragaki, Y; Kawamata, T; Sasayama, T; Yasuda, J; Uzuki, M; Kawaguchi, Y; Kawata, K; Yamaguchi, Y; Go, S; Arakawa, H; Kaji, H; Kitazume, S.
    Cerebrospinal fluid soluble protein tyrosine phosphatase receptor type Z detected with human natural killer-1 antibody as a practical biomarker for glioma diagnosis.
    Neuro-oncology advances. 2026 Apr 16;8(1):vdag101. doi:10.1093/noajnl/vdag101
  • Gupta, S; Kaushal, S; Bhargava, P; Ishida, Y; Terao, K; Kaul, SC; Dhanjal, JK; Wadhwa, R.
    Molecular Insights into the Neurogenic Potential of Alpha-lipoic Acid.
    Current topics in medicinal chemistry. 2026 May 11. doi:10.2174/0115680266426195260219062738
  • Zhang, H; Hirano, K; Khine, MN; Ochiishi, T; Kaul, SC; Doi, M; Wadhwa, R.
    Fucoxanthin, a bioactive compound derived from edible seaweed, supports proteostasis and protects against stress and senescence.
    Food research international (Ottawa, Ont.). 2026 Jun 1;233(Pt 2):118994. doi:10.1016/j.foodres.2026.118994
  • Mimura, M; Sugai, H; Kameda, T; Kitahara, R; Kitazawa, S; Shinkai, Y; Ishihara, S; Kurita, R; Tomita, S.
    Proximity of the Histone-Acetylation Site to the Termini Shapes Phase Behavior with DNA.
    Journal of the American Chemical Society. 2026 May 20;148(19):19845-19857. doi:10.1021/jacs.6c02267
  • Mishima, T; Nagamune, T; Tada, S; Watanabe, D; Tokuda, N; Yamada, T; Hashimoto-Hachiya, A; Higo-Yamamoto, S; Kido, K; Nagaoka, N; Ikedo, A; Imai, Y; Fujita, R; Mizuno, S; Takahashi, S; Oishi, K; Ato, S; Ogasawara, R.
    UNC45B Reduction With Aging: A Myofiber-Intrinsic Promoting Factor for Sarcopenia.
    Aging cell. 2026 May;25(5):e70502. doi:10.1111/acel.70502
  • Oishi, K; Suzuki, N.
    Sex-specific differences in psychophysiological stress-induced circadian sleep disruption and its impact on glucose metabolism in mice.
    Life sciences. 2026 May 15:393:124319. doi:10.1016/j.lfs.2026.124319
  • Singh, R; Mori, N; Kida, YS.
    Methodological innovations in perfusable vascular networks: Advancing high-density tissue models.
    Regenerative therapy. 2026 Apr 2;32:101109. doi:10.1016/j.reth.2026.101109
  • Yamasaki, K; Mizokami, M; Goto, M; Nagaoka, S; Saeki, A; Motoyoshi, Y; Suehiro, T; Kugiyama, Y; Komori, A; Ohashi, J; Yatsuhashi, H.
    Serum soluble PD-L1 predicts hepatocellular carcinoma development across distinct virological cohorts of chronic hepatitis C.
    Hepatology international. 2026 Apr 7. doi:10.1007/s12072-026-11075-7
  • Onozawa, M; Kusumoto, S; Kuwatsuka, Y; Miyazono, T; Tanaka, M; Najima, Y; Okada, K; Shiratori, S; Sato, T; Kanda, J; Inagaki, Y; Murayama, T; Hatano, K; Onodera, K; Sakurai, M; Endo, S; Kumode, T; Itonaga, H; Moriuchi, Y; Kanemura, N; Imi, T; Edahiro, T; Fukushima, N; Oura, M; Yui, S; Watanabe, M; Toubai, T; Ando, T; Nakamura, D; Tamaki, M; Kakinoki, Y; Okada, T; Nakano, N; Tachibana, T; Shimizu, H; Ota, S; Iida, S; Sugiyama, M; Atsuta, Y; Teshima, T; Yoshizumi, T; Mizokami, M.
    Vaccine-Induced Anti-HBs Response Is Associated with Protection Against Hepatitis B Virus Reactivation after Allogeneic Hematopoietic Cell Transplantation: A Randomized Trial.
    Transplantation and cellular therapy. 2026 May 17:pii: S2666-6367(26)00360-X. doi:10.1016/j.jtct.2026.05.015
  • Kojima, A; Mukai, R; Morisasa, M; Tawara, W; Amagaya, S; Furusho, K; Tsutsumi, N; Tadokoro, Y; Otsuka, H; Fujii, M; Kishida, T; Kuno, A; Tomioka, A; Okada, S; Mori, T; Goto-Inoue, N.
    Alaska pollock protein as a functional dietary source for promoting skeletal muscle hypertrophy and lipid metabolic remodeling.
    PloS one. 2026 May 13;21(5):e0348366. doi:10.1371/journal.pone.0348366
  • Lin, CC; Uno, H; Yamada, C; Terada, T; Lu, TJ; Fushinobu, S.
    Structural insights into glycoside hydrolase family 1 β-glucosidase: Selective oligosaccharide hydrolysis, synthesis, and product profiling.
    JOURNAL OF BIOLOGICAL CHEMISTRY. 2026 Apr;302(4):111293. doi:10.1016/j.jbc.2026.111293
  • Nishitsuji, H; Yoshimura, S; Konno, D; Tachibana, T; Sugiyama, M; Yamasaki, M; Mizokami, M; Murata, T; Shimotohno, K.
    ZO-2 determines cell membrane localization of receptor NTCP and supports hepatitis B virus infection.
    mBio. 2026 Apr 8;17(4):e0270425. doi:10.1128/mbio.02704-25
  • Tamano, K; Takayama, H; Kozone, I; Abe, Y; Kanda, A; Kudo, K; Suenaga, H; Shin-Ya, K.
    One-step in vivo assembly of a 63 kb-long biosynthetic gene cluster via multiple recombination in Aspergillus oryzae.
    Applied microbiology and biotechnology. 2026 May 7;110(1):148. doi:10.1007/s00253-026-13845-7
  • Suenaga, H; Fujihara, H.
    Molecular basis for adaptive evolution of aromatic degradation enzymes in bacteria revealed by metagenomics.
    Frontiers in microbiology. 2026 Apr 13;17:1795400. doi:10.3389/fmicb.2026.1795400
  • Kudo, K; Hashimoto, T; Awakawa, T; Zhang, L; Nishimura, T; Hashimoto, J; Kozone, I; Kagaya, N; Suenaga, H; Keatinge-Clay, AT; Abe, I; Shin-Ya, K.
    Skeletal editing via multi-step engineering of a modular polyketide synthase.
    Nature communications. 2026 Apr 8. doi:10.1038/s41467-026-71501-0
  • Boottanun, P; Nagai-Okatani, C; Kawanishi, K; Baba, M; Nakatsukasa, T; Ishizu, T; Angata, K; Kuno, A.
    A hierarchical lectin-based multimodal workflow for spatial mapping of extracellular matrix glycans in fibrotic hearts.
    Analytical and bioanalytical chemistry. 2026 Apr 27. doi:10.1007/s00216-026-06501-6
  • Kutsukake, M; Moriyama, M; Fukatsu, T.
    Evolution of molecular and cellular bases of self-sacrificing gall repair in social aphids.
    Scientific reports. 2026 May 15. doi:10.1038/s41598-026-51593-w
  • Odaka, H; Nakazora, S; Soga, H; Shimizu, H; Tateno, H.
    TEMIS: A temperature-controlled microwave irradiation system for enhancing extracellular vesicle secretion.
    Biochemistry and biophysics reports. 2026 May 2;46:102608. doi:10.1016/j.bbrep.2026.102608
  • Takano, T; Kumagai, K; Iuchi, H; Terahara, K; Mizuike, A; Sasaki, E; Adachi, Y; Kotaki, R; Moriyama, S; Ota, S; Fujisawa, M; Mizukami, T; Saito, K; Isogawa, M; Soga, K; Nakajima-Adachi, H; Hachimura, S; Kobiyama, K; Ishii, KJ; Hamada, M; Fukasawa, M; Shinkai, M; Matsumura, T; Takahashi, Y.
    A poorly reactogenic lipid nanoparticle-mRNA vaccine unveils an innate immune pathway for adverse reactions.
    NPJ vaccines. 2026 Apr 16. doi:10.1038/s41541-026-01441-9

2025

  • Mensah, EO; Nishimura, K; Morishita, K; Kato, Y; Fukuda, A; Sumaru, K; Hisatake, K; Sano, M.
    Enhancing the utility of Sendai virus-based vectors through antiviral compound-mediated removal.
    Journal of biotechnology. 2026 Mar 17;414:176-185. doi:10.1016/j.jbiotec.2026.03.018
  • Gueriba, JS; Espulgar, WV; Shigemori, H; Hauser, H; Ruhl, T; Kurita, M; Saito, M; Nagai, H; Fujita, S; Csaki, A; Fritzsche, W; Tamiya, E.
    Gradient Optical Response of Au Ellipse Nanopillar Array via Anisotropic Pillar Heights: A Highly Tunable Plasmonic Material toward Biosensing Applications.
    CS NANOSCI AU. 2025 Oct 6;6(1):21-27. doi:10.1021/acsnanoscienceau.5c00038
  • Tsunaka, Y; Fukuhara, M; Shimojo, S; Matsushita, A; Maruno, T; Soth, S; Nishiumi, H; Vergara Rocafort, MA; Kuwahara, T; Matsumoto, K; Shibata, K; Nakatsuka, R; Asahina, R; Mizukado, S; Fukai, Y; Togashi, T; Baatartsogt, N; Takeda, K; Kuno, A; Kashiwakura, Y; Yamaguchi, Y; Nakamura, K; Hirai, Y; Hirai, H; Ohmori, T; Omasa, T; Uchiyama, S.
    Manufacture of adeno-associated virus vectors by a novel human-derived cell line HAT and comprehensive evaluation of the vectors.
    Molecular therapy. Advances. 2026 Feb 14;34(1):201700. doi:10.1016/j.omta.2026.201700
  • Kawakami, T; Uemura, S; Ono, M; Horikoshi, K; Kuno, A; Kashiro, A; Honda, K; Nagashima, K; Kumada, K; Munekage, M; Seo, S; Furihata, K; Furihata, M; Honke, K; Kitago, M; Kitagawa, Y; Suematsu, M; Itonaga, M; Kabe, Y.
    A Pancreatic Ductal Adenocarcinoma Diagnostic System Using Serum Extracellular Vesicle Detection with Optimized Lectin Combination Using Machine Learning.
    Cancers. 2026 Mar 12;18(6):924. doi:10.3390/cancers18060924
  • Yamasaki, K; Shirahama, S; Yasaka, T; Yamaguchi, S; Mizokami, M; Tanaka, J; Okamoto, H; Yatsuhashi, H.
    Incidence and Characteristics of HBV Reactivation-Related Events Following HBsAg Seroclearance: Long-Term Follow-up of a Population-Based Cohort in Japan.
    Hepatology research : the official journal of the Japan Society of Hepatology. 2026 Feb 26. doi:10.1111/hepr.70146
  • Kanai, M; Shin-I, T; Date, T; Sakai, A; Mizokami, M; Sugiyama, M.
    Impact of a naturally occurring hepatitis B virus genotype D-specific core-promoter mutation on viral replication.
    The Journal of general virology. 2026 Feb;107(2). doi:10.1099/jgv.0.002225
  • Suenaga, H; Miyazaki, K; Fukushima, T.
    Draft genome sequence of Nonomuraea bangladeshensis strain B208 with high potential for specific cytochrome P450 monooxygenases.
    Microbiology resource announcements. 2026 Feb 18:e0137125. doi:10.1128/mra.01371-25
  • Yamamoto, J; Tokunaga, Y; Takeuchi, K; Imashimizu, M.
    Non-thermal acceleration of DNA base pairing by sub-terahertz irradiation.
    JOURNAL OF CHEMICAL PHYSICS. 2026 Feb 14;164(6):065102. doi:10.1063/5.0298033
  • Boottanun, P; Fuseya, S; Kuno, A; Nagai-Okatani, C.
    From Laser Microdissection to Spatial Glycomics: Lectin Microarray Protocols for Tissue Glycome Mapping with High-End Scanners.
    METHODS MOL BIOL. 2026;3015:21-41. doi:10.1007/978-1-0716-5154-4_3
  • Kano, R; Kusano, T; Ando, T; Takeda, R; Natsuyama, R; Takagi, R; Poole, DC; Kano, Y; Hoshino, D.
    Effects of local skeletal muscle cooling prior to acute exercise and endurance training on mitochondrial adaptation in mice.
    JOURNAL OF PHYSIOLOGICAL SCIENCES. 2026 Mar;76(1):100059. doi:10.1016/j.jphyss.2026.100059
  • Thanh, BT; Kurumida, Y; Kobayash,i K; Hamada, M; Kameda, T.
    Differentiation of RNA-protein docking structures through molecular dynamics simulation and machine learning methods.
    Briefings in bioinformatics. 2026 Mar 1;27(2):pii: bbag109. doi:10.1093/bib/bbag109
  • Watanabe, T; Tateno, H.
    Glycan Markers of Pluripotent Stem Cells.
    Advances in experimental medicine and biology. 2026 Jan;1491:283-294. doi:10.1007/978-3-032-04153-1_18
  • Yoshitomi, R; Sugiura, S.
    Interconnected multi-well device with three-dimensional shaker-driven culture medium circulation for use as a multi-organ microphysiological system.
    J BIOSCI BIOENG. 2026 Jan 29:S1389-1723(26)00001-0. doi:10.1016/j.jbiosc.2026.01.001
  • Moroishi, K; Nakamoto, M; Fujita, S; Kawahara, M; Katayama, R; Matsusaki, M.
    Escape from cell uptake: Drug-Free cancer therapeutics regulated by hydrophobicity and negative charge.
    MATER TODAY BIO. 2025 Dec 30;37:102752. doi:10.1016/j.mtbio.2025.102752
  • Chen, LM; Keisham, S; Tateno, H; Kleine, GY; Pabst, M; Pronk, M; van, Loosdrecht MCM; Lin, Y.
    Extracellular polymeric substances in aerobic granular sludge under increasing salinity conditions.
    WATER RES. 2026 Mar 15:292:125313. doi:10.1016/j.watres.2025.125313
  • Anh, DXT; Keisham, S; Burramsetty, A; Oinam, L; Kumano, K; Kuno, A; Shimomura, O; Oda, T; Tateno, H.
    GlycoChat Uncovers Glycan-Lectin Circuits in the Tumor Microenvironment of Pancreatic Cancer.
    ADVANCED SCIENCE. 2026 Jan 14:e14735. doi:10.1002/advs.202514735 2026
  • Ishino, T; Watanabe, T; Tokita, S; Ueda, Y; Kawase, K; Takano, Y; Thu, YM; Suzuki, Y; Owa, C; Inozume. T; Zhou, W; Nagasaki, J; Kochin. V; Ueno, T; Kojima, S; Honobe-Tabuchi, A, Kawamura, T; Ohnuma, T; Matsuzawa, T; Kawahara, Y; Yamashita, K; Lin, J; Koseki, J; Nishikawa, H; Araki, M; Kato, N; Shimamura, T; Morishita, S; Suzuki, Y; Mano, H; Torigoe, T; Kanaseki, T; Kawazu, M; Togashi, Y.
    Immunopeptidomics combined with full-length transcriptomics uncovers diverse neoantigens.
    CELL REP. 2025 Dec 24;45(1):116781. doi:10.1016/j.celrep.2025.116781
  • Mishima, T; Fujita, Y; Abe, T; Ato, S; Ogasawara, R.
    Implications for myofibrillar protein translation due to high-intensity muscle contraction via a rapamycin-insensitive mechanism.
    J APPL PHYSIOL (1985). 2026 Jan 1;140(1):220-228. doi:10.1152/japplphysiol.00179.2025
  • Kaida, K; Itoi, K; Soeta, Y; Ooie, T; Oishi, K.
    Effects of plain water intake before bedtime on sleep and depressive mood among middle-aged Japanese men.
    PLOS ONE. 2026 Jan 6;21(1):e0340490. doi:10.1371/journal.pone.0340490
  • Oishi, K; Okauchi, H; Higo-Yamamoto, S.
    Wheat Alkylresorcinols Induce Non-Rapid Eye Movement Sleep by Reducing Core Body Temperature in Mice.
    J NUTR SCI VITAMINOL (Tokyo). 2025;71(6):574-577. doi:10.3177/jnsv.71.574
  • Inuzuka, N; Shobayashi, Y; Tateshima, S; Sato, Y; Ohba, Y; Teramura, Y.
    Amine-functionalized surface modification accelerates endothelialization of intracranial stents.
    J NEUROINTERV SURG. 2026 Jan 30:jnis-2025-024646. doi:10.1136/jnis-2025-024646
  • Obuchi, S; Morita, M; Kuno, G; Mogami, T; Shuno, T; Ito, Y; Miyagishi, M; Ohba, Y; Kuramochi, A; Teramura, Y.
    Isolation of small extracellular vesicles by interacting with inorganic surface.
    REGEN THER. 2026 Jan 10;31:101063. doi:10.1016/j.reth.2026.101063
  • Yamazoe, H; Yamano, Y; Teramura, Y; Shinzaki, S.
    Cell patterning in vivo using microrobot specifically designed for tissue engineering applications.
    MATER TODAY BIO. 2025 Dec 17;36:102683. doi:10.1016/j.mtbio.2025.102683
  • Eikrem, D; Manivel, VA; Whittaker, J; Hamad, OA; Mohlin, C; Adler, A; Dührkop, C; Ebert, R; Teramura, Y; Ekdahl, KN; Fromell, K; Nilsson, B.
    Native C3 is activated without proteolytic cleavage by transformation to C3(H2O) on phospholipid-scrambled cell membranes.
    FRONTIERS IN IMMUNOLOGY. 2025 Dec 16:16:1729532. doi:10.3389/fimmu.2025.1729532
  • Lin, CC;Lin, MJ; Chou, JH; Lin, PY; Lu, TJ.
    Linkage-resolved profiling of isomalto-oligosaccharides using porous graphitic carbon liquid chromatography-orbitrap tandem mass spectrometry.
    FOOD CHEM. 2026 Feb 4;507:148278. doi:10.1016/j.foodchem.2026.148278
  • Kitazume, Y; Arai, E; Fujimoto, M; Ohara, K; Matsuda, A; Kakuda, S; Fujimoto, H; Maeshima, AM; Hiraoka, N; Yoshida, T; Kuno, A; Kanai, Y.
    Prognostically Significant Glycan Profiles of Clear Cell Renal Cell Carcinoma Identified by Integrated Glycome-Methylome Analysis.
    PATHOLOGY INTERNATIONAL. 2025 DEC 22. doi:10.1111/pin.70070
  • Takada, N; Ishikawa, M; Ninomiya, T; Izumi, Y; Sato, K; Kunikata, H; Yokoyama, Y; Tsuda, S; Fukuda, E; Yamaguchi, K; Ono, C; Kirihara, T; Shintani, C; Hanyuda, A; Goshima, N; Zorumski, CF; Nakazawa, T.
    An Exploratory Study of Machine Learning-Based Open-Angle Glaucoma Detection Using Specific Autoantibodies.
    BIOMEDICINES. 2025 Dec 10;13(12):3031. doi:10.3390/biomedicines13123031
  • Kondo, T; Takayama, Y; Kumagai, Y; Takemura, N; Hatakeyama, S; Tominaga, M; Maruyama, K.
    Bacterial extracellular vesicle ssRNA prevents colorectal cancer progression via Piezo1.
    CELL REPORTS. 2026 Jan 27;45(1):116737. doi:10.1016/j.celrep.2025.116737
  • Ishiguro, K; Midorikawa, K; Shigi, N; Kimura, S; Liiv, A; Yokoyama, T; Ito, T; Shirouzu, M; Remme, J; Miyauchi, K; Suzuki, T.
    Hypoxia-induced ribosomal RNA modifications in the peptidyl-transferase center contribute to anaerobic growth of bacteria.
    MOL CELL. 2026 Jan 8;86(1):78-96.e10. doi:10.1016/j.molcel.2025.11.018
  • Okamura, E; Ohsawa, K; Ban, H; Sugiyama, Y; Hashimoto, J; Kudo, K; Yoshida, M; Shin-Ya, K; Ikeda, H; Takahashi, S; Doi, T.
    Characterization of the ketoreductase domain of pikromycin module 2.
    CHEMICAL SCIENCE. 2025 DEC 17. doi:10.1039/d5sc07470c
  • Iwashita, T; Kanno, M; Ota, Y; Matsukura, S; Morita, M; Sasaki, A; Noda, N; Nishioka, T; Hirakata, Y; Tamaki, H.
    Draft genome sequence of Denitratisoma sp. strain agr-D3, isolated from common reed using a droplet-based cultivation method.
    MICROBIOL RESOUR ANNOUNC. 2026 Feb 9:e0101225. doi:10.1128/mra.01012-25
  • Hasegawa, H; Miyamoto, T; Isshiki, R; Kaneko, T; Takasugi, K; Noda, N; Tsuneda, S.
    Inhibition of Targeted Bacterial Growth Using MazF-Expressing Phagemids: A Novel Therapeutic Approach Based on Endoribonuclease Toxin Molecules.
    MICROBIOLOGY AND IMMUNOLOGY. 2026 Feb 4. doi:10.1111/1348-0421.70046
  • Kadowaki, H; Hatta, T; Sugiyama, K; Fukaya, T; Fujisawa, T; Hamano, T; Murao, N; Takami, Y; Mitoma, S; Natsume, T; Sato, K; Hirata, H; Uechi, T; Nishitoh, H.
    Sec61β maintains cytoplasmic proteostasis via ARIH1-mediated translational repression upon ER stress.
    EMBO REPORTS. 2026 JAN 27. doi:10.1038/s44319-026-00690-y
  • Iwashita, T; Kanno, M; Ota, Y; Matsukura, S; Morita, M; Sasaki, A; Noda, N; Nishioka, T; Hirakata, Y; Tamaki, H.
    Draft genome sequence of Dongia sp. strain agr-C8, isolated from the rhizosphere of Phragmites australis using a droplet-based cultivation method.
    MICROBIOL RESOUR ANNOUNC. 2026 Jan 13;15(1):e0101125. doi:10.1128/mra.01011-25
  • Kimura-Yamazaki, A; Adachi, T; Nakamura, S; Nakamura, Y; Hamada, M.
    RaptScore: a large language model-based algorithm for versatile aptamer evaluation.
    NUCLEIC ACIDS RESEARCH. 2026 Jan 14;54(2):gkaf1480. doi:10.1093/nar/gkaf1480
  • Amatsu, S; Matsumura, T; Morimoto, C; Keisham, S; Goto, Y; Kohda, T; Hirabayashi, J; Kitadokoro, K; Katayama, T; Kiyono, H;Tateno, H, Zuka, M; Fujinaga, Y.
    Gut mucin fucosylation dictates the entry of botulinum toxin complexes.
    NATURE COMMUNICATIONS. 2025 Nov 25;16(1):10442. doi:10.1038/s41467-025-65384-w
  • Singh, S; Islam, SMS; Liu, R; Adeniji, OS; Simons, LM; Saini, P; Tateno, H, Danesh, A; Denton, PW; Giron, LB; Jones, RB; Hultquist, JF; Xiao, H; Abdel-Mohsen, M.
    HIV-induced sialoglycans on infected CD4+ T cells promote immune evasion from myeloid cell-mediated killing.
    NAT COMMUN. 2025 Dec 13. doi:10.1038/s41467-025-66540-y
  • Koshiguchi, M; Yonezawa, N; Hatano, Y; Yamagata, K; Kobayashi, S.
    Momiji Embryonic Stem Cell System Enabling Live Imaging of Random X-Chromosome Inactivation In Vitro During Embryonic Development.
    METHODS MOL BIOL. 2025 Nov 12. doi:10.1007/7651_2025_681
  • Kikuta, H; Fujii, M; Naruse, Y; Nagai, K; Hiruta, R; Sakagami, T; Kobayashi, T; Takahashi, K; Koriyama, S; Saito, T; Muragaki, Y; Kawamata, T; Kawata, K; Kitazume, S.
    Analysis of PTPRZ expression in glioma and schwannoma - PTPRZ-long is highly expressed and shed in glioma.
    BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS. 2025 Nov 28:791:152925. doi:10.1016/j.bbrc.2025.152925
  • Arai, H; Nishikawa, Y; Konagaya, T; Kogawa, M; Kifushi, M; Takeyama, H; Anbutsu, H; Kageyama, D.
    Single-cell genome analysis of a feminizing Wolbachia in Eurema butterflies reveals a shared origin with male-killing Wolbachia.
    MICROB GENOM. 2025 Nov;11(11):001578. doi:10.1099/mgen.0.001578
  • Ogi, T; Kawano, Y; Usami, T; Hermawan, I; Yokaryo, H; Yamamoto, S; Saiki, P.
    Anti-inflammatory and UV-protective activities of isolated compounds from Calophyllum inophyllum L. in immune and skin cell models.
    JOURNAL OF NATURAL MEDICINES. 2025 NOV 12. doi:10.1007/s11418-025-01963-x
  • Yoshitomi, R; Nanda, R; Hirano, K; Kaul, SC; Dhanjal, JK; Wadhwa, R.
    Ashwagandha Withanolides, Withaferin-A, and Withanone for Natural Interventions in Aging and Obesity.
    MECH AGEING DEV. 2025 Nov 20:112126. doi:10.1016/j.mad.2025.112126
  • Nagai-Okatani, C; Hosoda, M; Hsiung, W; Sato, T; Sakaue, H; Fuseya, S; Fukuda, E; Yamada, I; Aoki-Kinoshita, KF; Kuno, A.
    Meeting Report on the 1st GlyCosmos Symposium.
    GLYCOBIOLOGY. 2025 Nov 21:cwaf079. doi:10.1093/glycob/cwaf079
  • Moonsan, N; Putthisen, S; Panawan, O; Luang, S; Mahalapbutr, P; Kitkhuandee, A; Duangthongphon, P; Jingjit, K; Piyawattanametha, N; Phankhongsab, A; Waraasawapati, S; Aphivatanasiri, C; Vaeteewoottacharn, K; Sawanyawisuth, K; Seubwai, W; Lert-Itthiporn, W; Saengboonmee, C; Proungvitaya, S; Talabnin, K; Talabnin, C; Kuno, A; Araki, N; Silsirivanit, A.
    Detection of Serum Tumor-Associated Glycobiomarker for Meningioma Using Dolichos biflorus Agglutinin.
    JOURNAL OF PROTEOME RESEARCH. 2025 NOV 18. doi:10.1021/acs.jproteome.5c00904
  • Tsuda, M; Nakatani, Y; Baba, S; Nonaka, K; Yoko-o, T; Chiba, Y.
    Optimization of heterologous protein production process using genetically engineered Ogataea minuta toward industrial-scale manufacturing.
    JOURNAL OF BIOSCIENCE AND BIOENGINEERING. 2025 Sep 8. doi:10.1016/j.jbiosc.2025.08.006
  • Nishimura, T; Kudo, K; Izumikawa, M; Kozone, I; Hashimoto, J; Amagai, K; Kagaya, N; Ogura, Y; Suenaga, H; Takikawa, H; Takahashi, S; Ikeda, H; Shin-Ya, K.
    JBIR-160-166 Obtained from the Heterologous Expression of a Cryptic Gene Cluster in Kitasatospora setae.
    ORG LETT. 2025 Nov 24. doi:10.1021/acs.orglett.5c03682
  • Kretsch, RC; Posani, E; Baulin, EF; Bujnicki, JM; Bussi, G; Cheatham, TE 3rd; Chen, SJ; Elofsson, A; Farsani, MA; Fisher, ON; Gromiha, MM; Gupta, A; Hamada, M; Harini, K; Hu, G; Huang, D; Iwakiri, J; Jain, A; Kagaya, Y; Kihara, D; Kmiecik, S; Krishnan, SR; Kurisaki, I; Languin-Cattoën, O; Li, J; Li, S; Malekzadeh, K; Nakamura, T; Ni, W; Nithin, C; Palo, MZ; Park, JH; Pilla, SP; Poblete, S; Pucci, F; Punuru, P; Saha, A; Sato, K; Srivastava, A; Terashi, G; Tugolukova, E; Verburgt, J; Wuyun, Q; Zerze, GH; Zhang, K; Zhang, S; Zheng, W; Zhou, Y; Chiu, W; Case, DA; Das, R.
    Blind Prediction of Complex Water and Ion Ensembles Around RNA in CASP16.
    PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS. 2025 NOV 8. doi:10.1002/prot.70079
  • Saini, P; Mirji, G; Islam, SMS; Simons, LM; Bhat, SA; Bonfanti, AP; Muthumani, K; Agrawal, P; Cassel, J; Tang, HY; Tateno, H; Zhang, R; Hultquist, JF; Shinde, RS; Abdel-Mohsen, M.
    Targeting Interactions Between Siglec-10 and α3β1 Integrin Enhances Macrophage-Mediated Phagocytosis of Pancreatic Cancer.
    CANCER RES. 2025 Nov 3:OF1-OF17. doi:10.1158/0008-5472.CAN-25-0977
  • Le, Joncour V; Evans, AD; Bergström, CK; Rangasami, VK; Samanta, S; Krishnan, N; Teramura, Y; Nilsson, B; Hedenqvist, P; Manell, E; Hilborn, J; Waern, MJ; Varghese, OP; Laakkonen, P; Oommen, OP.
    Therapeutic Reprogramming of Glioblastoma Phenotypic States Using Multifunctional Heparin Nanoparticles.
    ADV SCI (Weinh). 2025 Nov 3:e09590. doi:10.1002/advs.202509590
  • Asari, A; Sakaue, H; Kumagai, T; Ozeki, M; Mizuno, K; Sato, T.
    Qualitative Changes in Collagen Induced by UV Irradiation Affect Its Interaction with Cells.
    BIOLOGICAL & PHARMACEUTICAL BULLETIN. 2025 Oct;48(10):1611-1620. doi:10.1248/bpb.b25-00225
  • Zeng, C; Hamada, M.
    Identification and Sequence Characterization of Semi-extractable RNAs.
    METHODS MOL BIOL. 2026;2949:239-252. doi:10.1007/978-1-0716-4670-0_15
  • Tamai, K; Kinjo, S; Taguchi, A; Nagasaka, K; Yoshimoto, D; Duong, AQ; Yamamoto, Y; Iuchi, H; Mori, M; Sone, K; Hamada, M; Kawana, K; Ikeo, K; Hirota, Y; Osuga, Y.
    Elucidating Alterations in Viral and Human Gene Expression Due to Human Papillomavirus Integration by Using Multimodal RNA Sequencing.
    VIRUSES-BASEL. 2025 Oct 6;17(10):1344. doi:10.3390/v17101344
  • Takeda, Y; Onoguchi, M; Ito, F; Yamamoto, I; Sumi, S; Yoshii, T; Ishida, M; Kajikawa, E; Zhang, J; Nishimura, O; Kadota, M; Tagami, S; Kondo, T; Saito, H; Hamada, M; Shibuya, H.
    Nematode telomerase RNA hitchhikes on introns of germline-up-regulated genes.
    SCIENCE. 2025 Oct 23;390(6771):eads7778. doi:10.1126/science.ads7778
  • Iwame, S; Izu, K; Murata, Y; Taniguchi, M; Ochiishi, T;Yamaguchi, M.
    Impairment in re-learning of olfactory behaviors in mice expressing intracellular amyloid-β protein oligomers.
    JOURNAL OF ALZHEIMERS DISEASE. 2025 OCT 21. doi:10.1177/13872877251379439
  • Bekker, GJ; Fukunishi, Y; Higo, J; Kamiya, N.
    Assessment of RNA Force Fields for Dynamic Docking of Small Molecules Using Multicanonical MD Simulations.
    JOURNAL OF CHEMICAL THEORY AND COMPUTATION. 2025 Oct 22. doi:10.1021/acs.jctc.5c01114
  • Hirano, Y; Kojima, N; Sakurai, H; Saito, E; Nankai, H; Komatsu, Y.
    Analysis of the Effects of Sugar Modifications on RNA Chemical Ligation Reactions.
    CHEMBIOCHEM. 2025 Oct 28:e2500263. doi:10.1002/cbic.202500263
  • Ojima-Kato, T; Yokoyama, G; Nakano, H; Hamada, M; Motono, C.
    Screening and machine learning-based prediction of translation-enhancing peptides that reduce ribosomal stalling in Escherichia coli.
    RSC CHEM BIOL. 2025 Oct 22. doi:10.1039/d5cb00199d
  • Hara, T; Meng, S; Motooka, D; Arao, Y; Saito, Yk Rennie, S; Uchida, S; Ofusa, K; Arai, T; Konno, M; Satoh, T; Ishii, H.
    Deficiencies in methionine, tryptophan, and niacin remodels intestinal transcriptome and gut microbiota in female mice.
    SCI REP. 2025 Oct 16;15(1):36155. doi:10.1038/s41598-025-18046-2
  • Hirano, K; Egawa, H; Nishihara, S.
    The sulfation pattern of glycosaminoglycans in human brain development and neurological disorders such as Alzheimers disease.
    AM J PHYSIOL CELL PHYSIOL. 2025 Sep 1;329(3):C801-C811. doi:10.1152/ajpcell.00842.2024
  • Sato, Y; Hosaka, F; Niki, T; Osawa, H; Yoshihara, E; Sakamoto, S; Mitsuda, N; Teramura, Y.
    Promoting plant protoplast fusion via membrane decoration with cell-penetrating peptide-conjugated lipids.
    BIOCHEM BIOPHYS RES COMMUN. 2025 Sep 11;784:152635. doi:10.1016/j.bbrc.2025.152635
  • Sato, Y; Chung, UI; Teramura, Y.
    Induction of intercellular interaction and cell fusion by cell-penetrating peptide-conjugated lipids.
    J MATER CHEM B. 2025 Sep 2. doi:10.1039/d5tb01318f
  • Odaka, H; Tateno, H.
    Single-cell glycome and transcriptome profiling uncovers the glycan signature of each cell subpopulation of human iPSC-derived neurons.
    STEM CELL REPORTS. 2025 Aug 29:102631. doi:10.1016/j.stemcr.2025.102631
  • Girisa, S; Hegde, M; Harsha, C; Manteghi, N; Longkumer, I; Ahmed, GN; Baruah, MN; Kaul, SC; Wadhwa, R; Kunnumakkara, AB.
    Mortalin Represents a Promising Therapeutic Target for Oral Cancers: Clinical Relevance and Experimental Evidence for the Activation of Akt/mTOR Signaling.
    CANCERS. 2025 Aug 30;17(17):2860. doi:10.3390/cancers17172860
  • Miyashita, SI; Ogura, T; Matsuura, SI; Takagi, T; Fukuda, E.
    Qualitative Evaluation of Binding States of Lipid Membranes to Mesoporous Silica Microspheres via Single-Particle Inductively Coupled Plasma Mass Spectrometry.
    MOLECULES. 2025 Sep 4;30(17):3621. doi: 10.3390/molecules30173621
  • Dang, Cao TL; Kawanishi, K; Hashimoto, S; Hengphasatporn, K; Nagai-Okatani, C; imura, T; Abdelaziz, M; Shiratani, R; Poullikkas, T; Azmi, NU; Baba, M; Okita, Y; Watanabe, Y; Bando, H; Yamazaki, S; Shigeta, Y; Kuno, A; SKato, M.
    Tumor-expressed GPNMB orchestrates Siglec-9(+) TAM polarization and EMT to promote metastasis in triple-negative breast cancer.
    PROC NATL ACAD SCI U S A. 2025 Sep 9;122(36):e2503081122. doi: 10.1073/pnas.2503081122
  • Udomkitkosol, S; Thaiorn, P; Sintusen, P; Vaeteewoottacharn, K; Ketudat-Cairns, JR; Obchoei, S; Proungvitaya, S; Aung, TM; Kuno, A; Fuseya, S;Silsirivanit, A; Wongkham, S; Luang, S.
    Development of a monomeric recombinant Butea monosperma agglutinin as a diagnostic and prognostic biomarker for cholangiocarcinoma.
    BIOCHIM BIOPHYS ACTA GEN SUBJ. 2025 Aug 25;1869(11):130852. doi: 10.1016/j.bbagen.2025.130852
  • Suzuki, T; Yasui, K; Takata, H; Komatsu, Y; Kamiya, H.
    Action-at-a-Distance Mutations Induced by the True Abasic Site, Uracil, and Nicks: Unexpectedly Lower Mutagenicity of the True Abasic Site.
    BIOLOGICAL & PHARMACEUTICAL BULLETIN. 2025;48(7):1111-1117. doi:10.1248/bpb.b25-00366
  • Ando, T; Takeda, R; Kano, R; Kusano, T; Nonaka, Y; Kano, Y; Hoshino, D.
    Effects of pyruvate administration on mRNA expression of inflammatory cytokines in adipose tissue and whole-body glucose metabolism in male mice.
    PHYSIOL REP. 2025 Aug;13(15):e70362. doi:10.14814/phy2.70362
  • Kuno, A; Sakaue, H;Koizumi, S; Tomioka, A; Mizukado, S; Yamaguchi, Y; Fukuhara, M; Tsunaka, Y; Kaji, H; Uchiyama, S.
    Analytical dissection of minor glycoforms and glycoprotein associations in rAAV preparations by multimodal glycoproteomics.
    ANALYTICAL AND BIOANALYTICAL CHEMISTRY. 2025 Aug 7. doi: 10.1007/s00216-025-06042-4
  • Arai, J; Hayakawa, Y; Suzuki, N; Kinoshita, H; Hata, M; Kurokawa, K; Matsushita. Y; Abe, S; Oya, Y; Tsuboi, M; Ihara, S; Iwata, Y; Murakami, K; Shiokawa, T; Shiomi, C; Uekura, C; Yamamoto, K; Fujiwara, H; Kawamura, S; Nakagawa, H; Ikenoue, T; Tateno, H; Ushiku, T; Ijichi, H; Hirata, Y; Kasuga, M; Su, GH; Wang, TC; Fujishiro, M.
    ARID1A mutation drives gastric tumorigenesis via activating type 2 immune dominant microenvironment.
    ISCIENCE. 2025 Jul 15;28(8):113117. doi: 10.1016/j.isci.2025.113117
  • Suzuki, E; Serata, M; Sako, T; Sato, S; Iino, T; Tateno, H; Hirabayashi, J.
    Glycophenotyping of mutants of Lacticaseibacillus paracasei by lectin microarray.
    APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 2025 Jul 9:e0170724. doi: 10.1128/aem.01707-24
  • Mishima, T; Takenaka, Y; Hashimoto-Hachiya, A; Tanigawa, Y; Suzuki, N; Oishi, K; Ogasawara, R.
    Time-of-day effect of high-intensity muscle contraction on mTOR signaling and protein synthesis in mice.
    SCIENTIFIC REPORTS. 2025 Jul 3;15(1):23702. doi: 10.1038/s41598-025-06709-z
  • Okazaki, T; Nozaki, K; Morimoto, N; Otobe, Y; Saito, R; Abe, S; Okajima, M; Yoshitane, H; Hatta, T; Iemura, SI; Natsume, T; Kosako, H; Yamasaki, M; Inoue, S; Kondo, T; Koseki, H; Gotoh, Y.
    Membrane topology inversion of GGCX mediates cytoplasmic carboxylation for antiviral defense.
    SCIENCE. 2025 Jul 3;389(6755):84-91. doi: 10.1126/science.adk9967
  • Soeda, S; Montrose, M; Takahashi, A; Ishida, R; Burriel, S; Ohmine, N; Natsume, T; Adachi, S; Kim, M; Yamamoto, T.
    The E3 ubiquitin ligase, RNF219, suppresses CNOT6L expression to exhibit antiproliferative activity.
    FEBS OPEN BIO. 2025 Jul 1. doi: 10.1002/2211-5463.70081
  • Nakano, R; Iwano, N; Ichinose, A; Hamada, M.
    RaptGen-UI: an integrated platform for exploring and analyzing the sequence landscape of HT-SELEX experiments.
    BIOINFORM ADV. 2025 May 23;5(1):vbaf120. doi: 10.1093/bioadv/vbaf120
  • Mitani, Y; Kanie, S; Girisa, S; Kunnumakkara, AB; Kaul, SC; Ohmiya, Y.
    Characterization of luciferase from an Indian firefly Abscondita sp. (Coleoptera: Lampiridae)
    PHOTOCHEMISTRY AND PHOTOBIOLOGY. 2025 JUN 18. doi:10.1111/php.70001
  • Nagai-Okatani, C; Fujita, N; Boottanun, P; Tanaka, M; Shiota, M; Shinmachi, D; Angata, K; Aoki-Kinoshita, K; Kuno, A.
    LM-GlycoRepo Version 1.0: A Novel Repository System for Mouse Tissue Glycome Mapping Data.
    JOURNAL OF PROTEOME RESEARCH. 2025 JUN 11. doi:10.1021/acs.jproteome.5c00184
  • Lintuluoto, M; Horioka, Y; Fujiwara, M; Abe, M; Fukunishi, Y; Tamura, H; Lintuluoto, JM.
    Investigation on the Substrate Specificity of Serine Protease Neuropsin by Molecular Dynamics Simulation and Marmoset Gene Atlas (MGA.
    ACS OMEG. 2025 JUN 2. doi:10.1021/acsomega.5c00843
  • Kawai, Y; Kameyama, A; Sakuraba, H; Matsuzawa, T.
    Characterization of glycoside hydrolases involved in xyloglucan degradation in the thermophilic bacterium Thermotoga maritima.
    SCIENTIFIC REPORTS. 2025 Jun 6;15(1):19922. doi:10.1038/s41598-025-05366-6
  • Date, Y; Sasazawa, Y; Kitagawa, M; Gejima, K; Suzuki, A; Saya, H; Kida, Y; Imoto, M; Itakura, E; Hattori, N; Saiki, S.
    Novel autophagy inducers by accelerating lysosomal clustering against Parkinsons disease.
    ELIFE. 2024 Jul 3:13:e98649. doi:10.7554/eLife.98649
  • Mori, T; Zhou, MY; Kunugitani, K; Akatsuka, T; Yoshida, Y; Kouyama-Suzuki, E; Kobayashi, S; Shirai, Y; Tabuchi, K.
    The Competitive Loss of Cerebellar Granule and Purkinje Cells Driven by X-Linked Mosaicism in a Female Mouse Model of CASK-Related Disorders.
    CELLS. 2025 May 17;14(10):735. doi:10.3390/cells14100735
  • Sumaru, K; Maruyama, N; Morishita, K; Yokojima, S; Uchida, K.
    Photo-controllable cytotoxicity in cell culture using a diarylethene photoswitch.
    ORG BIOMOL CHEM. 2025 May 29. doi:10.1039/d4ob02087a
  • Motono, C; Yanagisawa, K; Koseki, J; Imai, K.
    CrypTothML: An Integrated Mixed-Solvent Molecular Dynamics Simulation and Machine Learning Approach for Cryptic Site Prediction.
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 2025 May 14;26(10):4710. doi:10.3390/ijms26104710
  • Koseki, J; Motono, C; Yanagisawa, K; Kudo, G; Yoshino, R; Hirokawa, T; Imai, K.
    CrypToth: Cryptic Pocket Detection through Mixed-Solvent Molecular Dynamics Simulations-Based Topological Data Analysis.
    JOURNAL OF CHEMICAL INFORMATION AND MODELING. 2025 May 22. doi:10.1021/acs.jcim.4c02111
  • Sakai, S; Fujiwara, H; Kazama, R; Toita, R;Fujita, S.
    Development of on-chip cell domes using Ca-alginate hydrogel shells for non-adherent cell studies.
    LAB CHIP. 2025 May 29. doi:10.1039/d5lc00204d
  • Mori, N; Miyazaki, Y; Oda, T; Kida, YS.
    RT-4M: Real-Time Mosaicing Manager for Manual Microscopy System.
    Sensors (Basel). 2025 May 8;25(10):2968. doi:10.3390/s25102968
  • Yamada, K; Suga, K; Abe, N; Hashimoto, K; Tsutsumi, S; Inagaki, M; Hashiya, F; Abe, H; Hamada, M.
    Multi-objective computational optimization of human 5 UTR sequences.
    BRIEF BIOINFORM. 2025 May 1;26(3):bbaf225. doi:10.1093/bib/bbaf225
  • Tsukamoto, S; Tateno, H; Shimomura, O; Yamamoto, K; Saito, S; Murakami, J; Nakahashi, H; Miyazaki, Y; Enomoto, T; Oda, T.
    Identification of CLEC10A as a human lectin for pancreatic ductal adenocarcinoma.
    SCIENTIFIC REPORTS. 2025 May 21;15(1):17652. doi:10.1038/s41598-025-02404-1
  • Shigematsu, K; Matsuda, K; Nabekura, T; Kanemaru, K; Shibuya, K; Tateno, H; Shibuya, A.
    Tn antigen suppresses lipopolysaccharide-induced dermatitis via Clec10a.
    BIOCHEM BIOPHYS RES COMMUN. 2025 May 15. doi:10.1016/j.bbrc.2025.152024
  • Kano, R; Takeda, R; Sotani, Y; Takagi, R; Tabuchi, A; Shirakawa, H; Poole, DC; Kano, Y; Hoshino, D.
    Cooling-induced changes in intracellular hydrogen peroxide and gene expression in mouse skeletal muscle in vivo.
    AM J PHYSIOL REGUL INTEGR COMP PHYSIOL. 2025 May 7. doi:10.1152/ajpregu.00014.2025
  • Nobe, M; Maruzuru, Y; Takeshima, K; Maeda, F; Kusano, H; Yoshimura, R; Nishiyama, T; Park, H; Kozaki, Y; Iwami, S; Koyanagi, N; Kato, A; Natsume, T; Adachi, S; Kawaguchi, Y.
    Direct relationship between protein expression and progeny yield of herpes simplex virus 1.
    MBIO. 2025 May 5:e0028025. doi:10.1128/mbio.00280-25
  • Oishi, K; Yoshida, Y; Kaida, K; Terai, K; Yamamoto, H; Toyoda, A.
    Potential non-invasive biomarkers of chronic sleep disorders identified by salivary metabolomic profiling among middle-aged Japanese men.
    SCI REP. 2025 Apr 21;15(1):10980. doi:10.1038/s41598-025-95403-1
  • Takeda, A; Nonaka, D; Imazu, Y; Fukunaga, T; Hamada, M.
    REPrise: de novo interspersed repeat detection using inexact seeding.
    MOB DNA. 2025 Apr 3;16(1):16. doi:10.1186/s13100-025-00353-0
  • Zhang, W; Obuchi, S; Teramura, Y.
    Analysis of cellular responses following interaction with extracellular vesicles derived from HEK293T and human adipose derived stem cells.
    SCI REP. 2025 Apr 7;15(1):11835. doi:10.1038/s41598-025-95559-w
  • Barbhuiya, PA; Yoshitomi, R; Pathak, MP.
    Understanding the Link Between Sterol Regulatory Element Binding Protein (SREBPs) and Metabolic Dysfunction Associated Steatotic Liver Disease (MASLD.
    CURR OBES REP. 2025 Apr 14;14(1):36. doi:10.1007/s13679-025-00626-y
  • Miyashita, SI; Ogura, T; Matsuura, SI; Fukuda, E.
    Quantitative Evaluation of Iron-Containing Proteins Bound to Mesoporous Silica Microspheres by Inductively Coupled Plasma Mass Spectrometry and Confocal Laser Raman Microscopy.
    MOLECULES. 2025 Mar 11;30(6):1252. doi:10.3390/molecules30061252
  • Takada, N; Ishikawa, M; Sato, K; Kunikata, H; Ninomiya, T; Hanyuda, A; Fukuda, E; Yamaguchi, K; Ono, C; Kirihara, T; Shintani, C; Tsusu, C; Osanai, A; Goshima, N; Izumi, Y; Zorumski, CF; Nakazawa, T.
    Proteome-Wide Analysis of Autoantibodies in Open-Angle Glaucoma in Japanese Population: A Pilot Study.
    BIOMEDICINES. 2025 Mar 14;13(3):718. doi:10.3390/biomedicines13030718
  • Prasad, K;Kaul, SC; Wadhwa, R; Guruprasad, KP; Satyamoorthy, K.
    Cellular oxidative stress and sirtuins mediate regulation of senescence and neuronal differentiation by withaferin A.
    FREE RADIC BIOL MED. 2025 Mar 26:S0891-5849(25)00188-1. doi:10.1016/j.freeradbiomed.2025.03.038
  • Ishii, N; Koja, Y; Noguchi, K; Yohda, M; Takeda, S.
    Enhancing specimen preparation for transmission electron microscopy: Trypan Blue staining and low-melting-point agar embedding for ultra-thin cell sections.
    J BIOSCI BIOENG. 2025 Mar 6:S1389-1723(25)00029-5. doi:10.1016/j.jbiosc.2025.02.003
  • Boottanun, P; Fuseya, S; Kuno, A.
    Toward spatial glycomics and glycoproteomics: Innovations and applications.
    BBA ADV. 2025 Feb. doi:10.1016/j.bbadva.2025.100146
  • Ohkawa, M; Ohshiro, T; Koseki, J; Kon, S; Ozeki, Y; Taniguchi, M; Shimamura, T; Konno, M.
    New RNA modifications induce malignancy for pancreatic cancer.
    CANCER SCIENCE. 2025 Mar. doi: 10.1111/cas.16114
  • Sato, T; Sugiyama, D; Koseki, J; Kojima, Y; Hattori, S; Sone, K; Nishinakamura, H; Ishikawa, T; Ishikawa, Y; Kato, T; Kiyoi, H; Nishikawa, H.
    Sustained inhibition of CSF1R signaling augments antitumor immunity through inhibiting tumor-associated macrophages.
    JCI INSIGHT. 2025 JAN 9. doi:10.1172/jci.insight.178146
  • Tateno, H; Mahal, LK; Feizi, T; Kettner, C; Paulson, JC.
    The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting lectin microarray data.
    GLYCOBIOLOGY. 2025 Feb 19. doi:10.1093/glycob/cwaf006
  • Ishii, N; Tateno, H.
    Preparation of Small Extracellular Vesicles Using Sequential Ultrafiltration with Regenerated Cellulose Membranes of Different Molecular Weight Cutoffs: A Study of Morphology and Size by Electron Microscopy.
    MICROSC MICROANAL. 2025 Jan 13. doi:10.1093/mam/ozae133
  • Ishii, N; Ogawa, Y.
    Grids designed for tomography: Stereovision transmission electron microscopy makes it easy to determine the winding handedness of helical nanocoils.
    MICRON. 2025 Mar;190:103784. Epub 2025 Jan 7. doi:10.1016/j.micron.2025.103784
  • Radhakrishnan, N; Kaul, SC; Wadhwa, R; Yang, LW; Sundar, D.
    Establishing a General Atomistic Model for the Stratum Corneum Lipid Matrix Based on Experimental Data for Skin Permeation Studies.
    INT J MOL SCI. 2025 Jan 15;26(2):674. doi:10.3390/ijms26020674
  • Zhang, H; Kim, H; Yuan, T; Zhang, Z; Kaul, SC; Wadhwa, R.
    Molecular Characterization of Cancer Preventive and Therapeutic Potential of Three Antistress Compounds, Triethylene Glycol, Withanone, and Withaferin A.
    INT J MOL SCI. 2025 Jan 9;26(2):493. doi:10.3390/ijms26020493
  • Prasad, K; Raghu, KS; Maruthiyodan, S; Wadhwa, R; Kaul, SC; Satyamoorthy, K; Guruprasad, KP.
    Promotion of cellular differentiation and DNA repair potential in brain cancer cells by Shankhpushpi, (Clitoria ternatea L.) with rasayana properties in vitro.
    J AYURVEDA INTEGR MED. 2025 Jan 10;16(1):101050. doi:10.1016/j.jaim.2024.101050
  • Yamagishi, A; Tokuoka, R; Imai, K; Mizusawa, M; Susaki, M; Uchida, K; Kijima, ST; Nagasaki, A; Takeshita, D; Yoshikawa, C; Uyeda, TQP; Nakamura, C.
    Nestin Forms a Flexible Cytoskeleton by Means of a Huge Tail Domain That Is Reversibly Stretched and Contracted by Weak Forces.
    CELLS. 2025 Jan 17;14(2):138. doi:10.3390/cells14020138

2024年

  • Limjanthong, N; Sugiura, S; Oda, T; Takusari, F; Fujiwara, Y; Miyazaki, T; Naganuma, K; Ohnuma, K.
    Monitoring and optimization of the microenvironment in a gravity-driven microfluidic system placed on a slow-tilting table.
    J BIOSCI BIOENG. 2025 Apr;139(4):311-318. doi:10.1016/j.jbiosc.2024.12.014
  • Teramura, Y; Cabral, H.
    Foreword to the focus issue: frontline research on biomaterials-based bioengineering for future therapy.
    SCI TECHNOL ADV MATER. 2025 Feb 21;26(1):2471206. doi:10.1080/14686996.2025.2471206
  • Zhu, J; Cai, HL; Goto, S; Shimada, M; Yurimoto, H; Sakai, Y; Yoko-O, T; Chiba, Y; Nakagawa, T.
    Physiological role of the FDH1 gene in methylotrophic yeast Komagataella phaffii and carbon recovery as formate during methylotrophic growth of the fdh1-deletion strain.
    J BIOSCI BIOENG. 2025 Jan 17. doi:10.1016/j.jbiosc.2024.12.007
  • Zhang, Y; Yang, W; Kumagai, Y; Loza, M; Yang, Y; Park, SJ; Nakai, K.
    In Silico Analysis Revealed Marco (SR-A6) and Abca1/2 as Potential Regulators of Lipid Metabolism in M1 Macrophage Hysteresis.
    INT J MOL SCI. 2024 Dec 26. doi:10.3390/ijms26010111
  • Keisham, S; Tateno, H.
    Emerging technologies for single-cell glycomics.
    BBA ADV. 2024 Nov 26. doi:10.1016/j.bbadva.2024.100125
  • Hashimoto, T; Suenaga, H; Shin-Ya, K.
    Application of Cas9-Based Gene Editing to Engineering of Nonribosomal Peptide Synthetases.
    CHEMBIOCHEM. 2024 Dec 30:e202400765. doi:10.1002/cbic.202400765
  • Shimazaki, H; Uojima, H; Yamasaki, K; Obayashi, T;Fuseya, S; Sato, T; Mizokami, M; Kuno, A.
    M2BPgs-HCC: An Automated Multilectin Bead Array Indicating Aberrant Glycosylation Signatures Toward Hepatitis C Virus-Associated Hepatocellular Carcinoma Prognosis.
    MOLECULES. 2024 Nov 28;29(23):5640. doi:10.3390/molecules29235640
  • Nagai-Okatani, C; Tomioka, A; Tominaga, D; Sakaue, H; Kuno, A; Kaji, H.
    Inter-tissue glycan heterogeneity: site-specific glycoform analysis of mouse tissue N-glycoproteomes using MS1-based glycopeptide detection method assisted by lectin microarray.
    ANALYTICAL AND BIOANALYTICAL CHEMISTRY. 2024 Dec 16. doi:10.1007/s00216-024-05686-y
  • Kudo, K; Nishimura, T; Miyako, K; Suenaga, H; Shin-Ya, K.
    A new cannabigerolic acid derivative and its unprenylated precursor produced through the reconstitution of cannabinoid biosynthesis in Streptomyces.
    J ANTIBIOT (Tokyo). 2024 Dec 3. doi:10.1038/s41429-024-00793-5
  • Li, D; Han, H; Sun, Y; Zhang, H; Yoshitomi, R; Kaul, SC; Wadhwa, R.
    Molecular Insights into the Inhibition of Lipid Accumulation in Hepatocytes by Unique Extracts of Ashwagandha.
    INT J MOL SCI. 2024 Nov 14;25(22):12256. doi:10.3390/ijms252212256
  • Hossain, AS; Clarin, MTRDC; Kimura, K; Biggin, G; Taga, Y; Uto, K; Yamagishi, A; Motoyama, E; Narenmandula; Mizuno, K; Nakamura, C; Asano, K; Ohtsuki, S; Nakamura, T; Kanki, S; Baldock, C; Raja, E; Yanagisawa, H.
    Fibrillin-1 G234D mutation in the hybrid1 domain causes tight skin associated with dysregulated elastogenesis and increased collagen cross-linking in mice.
    MATRIX BIOL. 2024 Nov 28:S0945-053X(24)00142-2. doi:10.1016/j.matbio.2024.11.006
  • Okamura, Y; Gochi, K; Ishikawa, T; Hayashi, T; Fuseya, S; Suzuki, R; Kanai, M; Inoue, Y; Murakami, Y; Sadaki, S; Jeon, H; Hayama, M; Ishii, H; Tsunakawa, Y; Ochi, H; Sato, S; Hamada, M; Abe, C; Morita, H; Okada, R; Shiba, D; Muratani, M; Shinohara, M; Akiyama, T; Kudo, T; Takahashi, S.
    Impact of microgravity and lunar gravity on murine skeletal and immune systems during space travel.
    SCI REP. 2024 Nov 20;14(1):28774. doi:10.1038/s41598-024-79315-0
  • Yamaguchi, Y; Ishii, K; Koizumi, S; Sakaue, H; Maruno, T; Fukuhara, M; Shibuya, R; Tsunaka, Y; Matsushita, A; Bandoh, K; Torisu, T; Murata-Kishimoto, C; Tomioka, A; Mizukado, S; Kaji, H; Kashiwakura, Y; Ohmori, T; Kuno, A; Uchiyama, S.
    Mucin-Type O-Glycosylation in Viral Protein 2 Indirectly Affects the Transduction Efficiency of Recombinant Adeno-Associated Virus Serotype 6.
    MOLECULAR THERAPY. Vol 32 No 4S1, 688-689. 22 APR 2024. doi:
  • Kusano, T; Sotani, Y; Takeda, R; Hatano, A; Kawata, K; Kano, R; Matsumoto, M; Kano, Y; Hoshino, D.
    Time-series transcriptomics reveals distinctive mRNA expression dynamics associated with gene ontology specificity and protein expression in skeletal muscle after electrical stimulation-induced resistance exercise.
    FASEB J. 2024 Nov 30;38(22):e70153. doi:10.1096/fj.202401420RR
  • Sato, T; Abe, K; Koseki, J; Seto, M; Yokoyama, J; Akashi, T; Terada, M; Kadowaki, K; Yoshida, S; Yamashiki, YA; Shimamura, T.
    Survivability and life support in sealed mini-ecosystems with simulated planetary soils.
    SCI REP. 2024 Nov 1;14(1):26322. doi: 10.1038/s41598-024-75328-x
  • Zhou, J; Sekiguchi, Y; Sano, M; Nishimura, K; Hisatake, K; Fukuda, A.
    A Sendai virus-based expression system directs efficient induction of chondrocytes by transcription factor-mediated reprogramming.
    SCI REP. 2024 Oct 29;14(1):26004. doi: 10.1038/s41598-024-77508-1
  • Yoshinori, F; Imai, K; Horton, P.
    Prediction of mitochondrial targeting signals and their cleavage sites.
    METHODS ENZYMOL. 2024 Sep 11. doi: 10.1016/bs.mie.2024.07.026
  • Mawaribuchi, S; Iida, M; Haramoto, Y.
    Fusion of breast cancer MCF-7 cells with mesenchymal stem cells rearranges interallelic gene expression and enhances cancer malignancy.
    BIOCHEM BIOPHYS RES COMMUN. 2024 Oct 23:736:150887. doi: 10.1016/j.bbrc.2024.150887
  • Kaushal, S; Gupta, S; Shefrin, S; Vora, DS; Kaul, SC; Sundar, D; Wadhwa, R; Dhanjal, JK.
    Synthetic and Natural Inhibitors of Mortalin for Cancer Therapy.
    CANCERS (Basel). 2024 Oct 13;16(20):3470. doi: 10.3390/cancers16203470
  • Yamamoto, K; Uzaki, M; Takahashi, K; Mimura, T.
    Current status of MSI research in Japan to measure the localization of natural products in plants.
    CURR OPIN PLANT BIOL. 2024 Oct 19;82:102651. doi: 10.1016/j.pbi.2024.102651
  • Sakaue, H; Kuno, A.
    isoAsp-Quest: Workflow development for isoAsp identification using database searches.
    J BIOCHEM. 2024 Oct 23:mvae071. doi: 10.1093/jb/mvae071
  • Shimazaki, H; Fuseya, S; Ono, A; Ootani, H; Mizukado, S; Obayashi, T; Tanaka, N; Kajiyama, K; Ashitomi, M; Yamauchi, K; Yasuda, S; Miyabe, T; Nakamura, K; Segawa, O; Kuno, A; Sawakami, K.
    Benchtop glyco-analyzer: from development of biomarker to potential use in clinical setting.
    CLINICAL CHEMISTRY. 2024 Oct 1. doi: 10.1093/clinchem/hvae106.381
  • Kakizuka, T; Natsume, T; Nagai, T.
    Compact lens-free imager using a thin-film transistor for long-term quantitative monitoring of stem cell culture and cardiomyocyte production.
    LAB ON A CHIP. 2024 OCT 14. doi: 10.1039/d4lc00528g
  • Kumagai, Y.
    BootCellNet, a resampling-based procedure, promotes unsupervised identification of cell populations via robust inference of gene regulatory networks.
    PLOS COMPUT BIOL. 2024 Sep 30;20(9):e1012480. doi: 10.1371/journal.pcbi.1012480
  • Wadhwa, R; Wang, J; Shefrin, S; Zhang, H; Sundar, D; Kaul, SC.
    Molecular Insights into the Anticancer Activity of Withaferin-A: The Inhibition of Survivin Signaling.
    CANCERS (Basel). 2024 Sep 5;16(17):3090. doi: 10.3390/cancers16173090
  • Morikawa, K; Nagasaki, A; Sun, L; Kawase, E; Ebihara, T; Shirayoshi, Y.
    Optogenetic control of early embryos labeling using photoactivatable Cre recombinase 3.0.
    FEBS OPEN BIO. 2024 Sep 2. doi: 10.1002/2211-5463.13862
  • Koshiguchi, M; Yonezawa, N; Hatano, Y; Suenaga, H; Yamagata, K; Kobayashi, S.
    A system to analyze the initiation of random X-chromosome inactivation using time-lapse imaging of single cells.
    SCI REP. 2024 Sep 2;14(1):20327. doi: 10.1038/s41598-024-71105-y
  • Kurosu, J; Sakamaki, T; Kanai, K; Morishita, K; Sumaru, K; Tsutsumi, J.
    Spatiotemporal dynamics of microscopic biological barrier visualized by electric-double-layer modulation imaging.
    BIOSENS BIOELECTRON. 2024 Aug 30;266:116721. doi: 10.1016/j.bios.2024.116721
  • Inuzuka, N; Shobayashi, Y; Tateshima, S; Sato, Y; Ohba, Y; Ishihara, K; Teramura, Y.
    Stable and Thin-Polymer-Based Modification of Neurovascular Stents with 2-Methacryloyloxyethyl Phosphorylcholine Polymer for Antithrombogenicity.
    BIOENGINEERING (Basel). 2024 Aug 15;11(8):833. doi: 10.3390/bioengineering11080833
  • Hayashi, Y; Tajiri, K; Ozawa, T; Angata, K; Sato, T; Togayachi, A; Nagashima, I; Shimizu, H; Murayama, A; Muraishi, N; Narimatsu, H; Yasuda, I.
    Impact of preS1 Evaluation in the Management of Chronic Hepatitis B Virus Infection.
    MEDICINA (Kaunas). 2024 Aug 16;60(8):1334. doi: 10.3390/medicina60081334
  • Tokuoka, SM; Hamano, F; Kobayashi, A; Adachi, S; Andou, T; Natsume, T; Oda, Y.
    Plasma proteomics and lipidomics facilitate elucidation of the link between Alzheimers disease development and vessel wall fragility.
    SCI REP. 2024 Aug 27;14(1):19901. doi: 10.1038/s41598-024-71097-9
  • Sato, Y; Baba, T; Uchida, T; Chung, UI; Teramura, Y.
    Cell membrane fusion induced by surface modification with cell-penetrating peptide–lipid conjugates that facilitates close contact between distinct membranes.
    Mater. Adv. 2024 May 11. doi: 10.1039/D4MA00193A
  • Satoh, T; Yagi-Utsumi, M; Ishii, N; Mizushima, T; Yagi, H; Kato, R; Tateno, H; Matsuo, I; Kato, K; Suzuki, T; Yoshida, Y.
    Structural basis of sugar recognition by SCFFBS2 ubiquitin ligase involved in NGLY1 deficiency.
    FEBS LETTERS. 2024 Aug 22. doi: 10.1002/1873-3468.15003
  • Shi, Y; He, H; Zhang, H; Yuan, T; Zhang, Z; DeSilva, R; Ishida, Y; Terao, K; Kaul, SC; Wadhwa, R.
    Cyclodextrin-assisted Aqueous Extract of Cinnamon for Cancer and Stress Management.
    CURR TOP MED CHEM. 2024 Aug 20. doi: 10.2174/0115680266309291240808114508
  • Nagai-Okatani, C; Tominaga, D; Tomioka, A; Sakaue, H; Goda, N; Ko, S; Kuno, A; Kaji, H.
    GRable version 1.0: A software tool for site-specific glycoform analysis with improved MS1-based glycopeptide detection with parallel clustering and confidence evaluation with MS2 information.
    MOL CELL PROTEOMICS. 2024 Aug 22:100833. doi: 10.1016/j.mcpro.2024.100833
  • Páez-Watson, T; Tomás-Martínez, S; de, Wit R; Keisham, S; Tateno, H; van, Loosdrecht MCM; Lin, Y.
    Sweet Secrets: Exploring Novel Glycans and Glycoconjugates in the Extracellular Polymeric Substances of “Candidatus Accumulibacter”.
    ACS ES T WATER. 2024 Jul 12;4(8):3391-3399. doi: 10.1021/acsestwater.4c00247
  • Tomita, T; Nakajima, Y; Ohmiya, Y; Miyazaki, K.
    Novel three-dimensional live skin-like in vitro composite for bioluminescence reporter gene assay.
    FEBS JOURNAL. 024 Aug 15. doi: 10.1111/febs.17246
  • Sato, Y; Zhang, WX; Baba, T; Chung, UI; Teramura, Y.
    Extracellular vesicle-liposome hybrids via membrane fusion using cell-penetrating peptide-conjugated lipids.
    REGENERATIVE THERAPY. 2024 Jul 29. doi: 10.1016/j.reth.2024.07.006
  • Xu, Z; Zhang, H; Tian, J; Ku, X; Wei, R; Hou, J; Zhang, C; Yang, F; Zou, X; Li, Y; Kaji, H; Tao, SC; Kuno, A; Yan, W; Da, LT; Zhang, Y.
    O-glycosylation of SARS-CoV-2 spike protein by host O-glycosyltransferase strengthens its trimeric structure.
    ACTA BIOCHIM BIOPHYS SIN (Shanghai). 2024 Jul 26. doi: 10.3724/abbs.2024127
  • Ma, ST; Yoda, H; Dang, T; Yang, JQ; Ando, I; Sato, Y; Teramura, Y; Tabata, H; Matsui, H.
    Light Polarization Effects of Chemical Sensing in the Mid-Infrared Region Using ZnO: Ga-Based Plasmonic Surface Lattice Resonances.
    JOURNAL OF PHYSICAL CHEMISTRY C. July 15, 2024. doi: 10.1021/acs.jpcc.4c02354
  • Kano, R; Kusano, T; Takeda, R; Shirakawa, H; Poole, DC; Kano, Y; Hoshino, D.
    Eccentric contraction increases hydrogen peroxide levels and alters gene expression through Nox2 in skeletal muscle of male mice.
    J APPL PHYSIOL (1985). 2024 Jul 25. doi: 10.1152/japplphysiol.00335.2024
  • Yamasaki, K; Tsuzuki, S; Tateno, H.
    Stabilization of the Protein Structure by the Many-Body Cooperative Effect in the NH/π Hydrogen-bonding Tryptophan Triad.
    J PHYS CHEM B. 2024 Jul 17. doi: 10.1021/acs.jpcb.4c02391
  • Arai, J; Hayakawa, Y; Tateno, H; Fujiwara, H; Kasuga, M; Fujishiro, M.
    The role of gastric mucins and mucin-related glycans in gastric cancers.
    CANCER SCI. 2024 Jul 19. doi: 10.1111/cas.16282
  • Fuseya, S; Ono, A; Ootani, H; Mizukado, S; Obayashi, T; Tanaka, N; Shimazaki, H; Kajiyama, K; Ashitomi, M; Yasuda, S; Miyabe, T; Nakamura, K; Segawa, O; Sawakami, K; Kuno, A.
    Rapid Glyco-Qualitative Assessment of Recombinant Proteins Using a Fully Automated System.
    J VIS EXP. 2024 Jun 28;(208). doi: 10.3791/66571
  • Akagi, Y; Norimoto, A; Kawamura, T; Kida, YS.
    Label-Free Assessment of Neuronal Activity Using Raman Micro-Spectroscopy.
    MOLECULES. 2024 Jul 3;29(13):3174. doi: 10.3390/molecules29133174
  • Inuzuka, N; Shobayashi, Y; Tateshima, S; Sato, Y; Ohba, Y; Ekdahl, KN; Nilsson, B; Teramura, Y.
    Stent coating containing a charged silane coupling agent that regulates protein adsorption to confer antithrombotic and cell-adhesion properties.
    SCI REP. 2024 Jul 10;14(1):15178. doi: 10.1038/s41598-024-65832-5
  • Shu, Y; Otake, M; Seta, Y; Hori, K; Kuramochi, A; Ohba, Y; Teramura, Y.
    Activation of cellular antioxidative stress and migration activities by purified components from immortalized stem cells from human exfoliated deciduous teeth.
    SCI REP. 2024 Jul 3;14(1):15340. doi: 10.1038/s41598-024-66213-8
  • Wadhwa, R; Yang, S; Meidinna, HN; Sari, AN; Bhargava, P;Kaul, SC.
    Mixtures of Three Mortaparibs with Enhanced Anticancer, Anti-Migration, and Antistress Activities: Molecular Characterization in p53-Null Cancer Cells.
    Cancers (Basel). 2024 Jun 17;16(12):2239. doi: 10.3390/cancers16122239
  • Wadhwa, R; Hegde, M; Zhang, HY; Kaul, A; Wang, J; Ishida, Y; Terao, K; Kunnumakkara, AB; Kaul, SC.
    Antistress and Antiaging Potentials of Alpha-Lipoic Acid: Insights from Cell Culture-Based Experiments.
    APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY. 2024 Jun 28. doi: 10.1007/s12010-024-04994-4
  • Wang, ZG; Yang, ZH; Shishido, M; Daoudi, K; Hidaka, M; Tateno, H; Futai, E; Ogawa, T.
    Microcystis viridis NIES-102 Cyanobacteria Lectin (MVL) Interacts with SARS-CoV-2 Spike Protein Receptor Binding Domains (RBDs) via Protein-Protein Interaction.
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 2024 Jun 18;25(12):6696. doi: 10.3390/ijms25126696
  • Fujii, Y; Kamata, K; Gerdol, M; Hasan, I; Rajia, S; Kawsar, SMA; Padma, S; Chatterjee, BP; Ohkawa, M; Ishiwata, R; Yoshimoto, S; Yamada, M; Matsuzaki, N; Yamamoto, K; Niimi, Y; Miyanishi, N; Konno, M; Pallavicini, A; Kawasaki, T; Ogawa, Y; Ozeki, Y; Fujita, H.
    Multifunctional Cell Regulation Activities of the Mussel Lectin SeviL: Induction of Macrophage Polarization toward the M1 Functional Phenotype.
    MARINE DRUGS. 2024 Jun 11;22(6):269. doi: 10.3390/md22060269
  • Hayashi, T; Sadaki, S; Tsuji, R; Okada, R; Fuseya, S; Kanai, M; Nakamura, A; Okamura, Y; Muratani, M; Wenchao, G; Sugasawa, T; Mizuno, S; Warabi, E; Kudo, T; Takahashi, S; Fujita, R.
    Dual-specificity phosphatases 13 and 27 as key switches in muscle stem cell transition from proliferation to differentiation.
    STEM CELLS. 2024 Jul 8:sxae045. doi: 10.1093/stmcls/sxae045
  • Shimada, N; Kameyama, A; Watanabe, M; Sahara, T; Matsuzawa, T.
    Identification and characterization of xyloglucan-degradation related α-1,2-l-fucosidase in Aspergillus oryzae.
    J BIOSCI BIOENG. 2024 Jun 12:S1389-1723(24)00159-2. doi: 10.1016/j.jbiosc.2024.05.011
  • Watanabe, A; Koyano, F; Imai, K; Hizukuri, Y; Ogiwara, S; Ito, T; Miyamoto, J; Shibuya, C; Kimura, M; Toriumi, K; Motono, C; Arai, M; Tanaka, K; Akiyama, Y; Yamano, K; Matsuda, N.
    The origin of esterase activity of Parkinsons disease causative factor DJ-1 implied by evolutionary trace analysis of its prokaryotic homolog HchA.
    J BIOL CHEM. 2024 Jun 13:107476. doi: 10.1016/j.jbc.2024.107476
  • Tomita, T; Wadhwa, R; Onishi, Y.
    Natural Compounds that Modulate Circadian Rhythms.
    CURR TOP MED CHEM. 2024 May 30. doi: 10.2174/0115680266300569240514101800
  • Kato, A; Iwasaki, R; Takeshima, K; Maruzuru, Y; Koyanagi, N; Natsume, T; Kusano, H; Adachi, S; Kawano, S; Kawaguchi, Y.
    Identification of a novel neurovirulence factor encoded by the cryptic orphan gene UL31.6 of herpes simplex virus 1.
    J VIROL. 2024 May 31:e0074724. doi: 10.1128/jvi.00747-24
  • Yamaguchi, Y; Ishii, K; Koizumi, S; Sakaue, H; Maruno, T; Fukuhara, M; Shibuya, R; Tsunaka, Y; Matsushita, A; Bandoh, K; Torisu, T; Murata-Kishimoto, C; Tomioka, A; Mizukado, S; Kaji, H; Kashiwakura, Y; Ohmori, T; Kuno, A;; Uchiyama, S.
    Glycosylation of recombinant adeno-associated virus serotype 6.
    MOL THER METHODS CLIN DEV. 2024 Apr 25;32(2):101256. doi: 10.1016/j.omtm.2024.101256
  • Nishimura, T; Kudo, K; Izumikawa, M; Kozone, I; Hashimoto, J; Kagaya, N; Suenaga, H; Takeuchi, K; Shin-Ya, K.
    Isolation and Structure Elucidation of JBIR-157, a Skeletally Novel Aromatic Polyketide Produced by the Heterologous Expression of a Cryptic Gene Cluster.
    CHEM PHARM BULL (Tokyo). 2024;72(5):475-479. doi: 10.1248/cpb.c24-00144
  • Song, X; Nihashi, Y; Imai, Y; Mori, N; Kagaya, N; Suenaga, H; Shin-Ya, K; Yamamoto, M; Setoyama, D; Kunisaki Y; Kida, YS .
    Collagen Lattice Model, Populated with Heterogeneous Cancer-Associated Fibroblasts, Facilitates Advanced Reconstruction of Pancreatic Cancer Microenvironment.
    INT J MOL SCI. 2024 Mar 27;25(7):3740. doi: 10.3390/ijms25073740
  • Nie, H; Saini, P; Miyamoto, T; Liao, L; Zielinski, RJ; Liu, H; Zhou, W; Wang, C; Murphy, B; Towers, M; Yang, T; Qi, Y; Kannan, T; Kossenkov, A; Tateno, H; Claiborne, DT; Zhang, N; Abdel-Mohsen, M; Zhang, R.
    Targeting branched N-glycans and fucosylation sensitizes ovarian tumors to immune checkpoint blockade.
    NAT COMMUN. 2024 Apr 2;15(1):2853. doi: 10.1038/s41467-024-47069-y
  • Arai, J; Hayakawa, Y; Tateno, H; Murakami, K; Hayashi, T; Hata, M; Matsushita, Y; Kinoshita, H; Abe, S; Kurokawa, K; Oya, Y; Tsuboi, M; Ihara, S; Niikura, R; Suzuki, N; Iwata, Y; Shiokawa, T; Shiomi, C; Uekura, C; Yamamoto, K; Fujiwara, H; Kawamura, S; Nakagawa, H; Mizuno, S; Kudo, T; Takahashi, S; Ushiku, T; Hirata, Y; Fujii, C; Nakayama, J; Shibata, S; Woods, S; Worthley, DL; Hatakeyama, M; Wang, TC; Fujishiro, M.
    Impaired glycosylation of gastric mucins drives gastric tumorigenesis and serves as a novel therapeutic target.
    GASTROENTEROLOGY. 2024 Apr 5:S0016-5085(24)00363-9. doi: 10.1053/j.gastro.2024.03.037
  • Hiono, T; Sakaue, H; Tomioka, A; Kaji, H; Sasaki, M; Orba, Y; Sawa, H; Kuno, A.
    Combinatorial Approach with Mass Spectrometry and Lectin Microarray Dissected Site-Specific Glycostem and Glycoleaf Features of the Virion-Derived Spike Protein of Ancestral and γ Variant SARS-CoV-2 Strains.
    J PROTEOME RES. 2024 Mar 27. doi: 10.1021/acs.jproteome.3c00874
  • Miura, I; Shams, F; Ohki, J; Tagami, M; Fujita, H; Kuwana, C; Nanba, C; Matsuo, T Ogata, M; Mawaribuchi, S; Shimizu, N; Ezaz, T.
    Multiple Transitions between Y Chromosome and Autosome in Tagos Brown Frog Species Complex.
    GENES (Basel). 2024 Feb 26;15(3):300. doi: 10.3390/genes15030300
  • Hagihara, H; Shoji, H; Hattori, S; Sala, G; Takamiya, Y; Tanaka, M; Ihara, M; Shibutani, M; Hatada, I; Hori, K;... Oishi, K; ... Miyakawa, T.
    Large-scale animal model study uncovers altered brain pH and lactate levels as a transdiagnostic endophenotype of neuropsychiatric disorders involving cognitive impairment.
    Elife. 2024 Mar 26:12:RP89376. doi: 10.7554/eLife.89376
  • Nakahashi, H; Oda, T; Shimomura, O; Akashi, Y; Takahashi, K; Miyazaki, Y; Furuta, T; Kuroda, Y; Louphrasitthiphol, P; Mathis, BJ; Tateno, H.
    Aberrant Glycosylation in Pancreatic Ductal Adenocarcinoma 3D Organoids Is Mediated by KRAS Mutations.
    J ONCOL. 2024 Mar 18;2024:1529449. doi: 10.1155/2024/1529449

2023年

  • Ohkura, N; Morimoto-Kamata ,R; Kamikubo, Y; Takahashi, Y; Oishi, K.
    Hypofibrinolytic phenotype in Tsumura Suzuki Obese Diabetes (TSOD) mice unrelated to hyperglycemia.
    Drug Discov Ther. 2023 Nov 18;17(5):346-350. doi: 10.5582/ddt.2023.01064
  • Ohkura, N; Morimoto-Kamata, R; Oishi, K; Higo-Yamamoto, S; Fujinami, A; Inoue, KI; Ohta, M.
    Supplementation with Ashitaba (Angelica keiskei) yellow stem exudate prevents aging-induced thrombotic tendencies and systemic inflammation without affecting body weight gain in mice.
    J Med Food. 2023 Nov;26(11):843-848. doi: 10.1089/jmf.2023.K.0140
  • Oishi, K; Yajima, Y; Yoshida, Y; Hagihara, H; Miyakawa, T; Higo-Yamamoto, S; Toyoda, A.
    Metabolic profiles of saliva in male mouse models of chronic sleep disorders induced by psychophysiological stress.
    Sci Rep. 2023;13(1):11156. doi: 10.1038/s41598-023-38289-1
  • Kanie, S; Wu, C; Kihira, K; Yasuno, R; Mitani, Y; Ohmiya, Y.
    Bioluminescence of (R)-Cypridina Luciferin with Cypridina Luciferase.
    INT J MOL SCI. 2024 Feb 26;25(5):2699. doi: 10.3390/ijms25052699
  • Sakata, S; Li, J; Yasuno, Y; Shinada, T; Shin-ya, K;Katsuyama, Y; Ohnishi, Y.
    Identification of the cirratiomycin biosynthesis gene cluster in Streptomyces cirratus: elucidation of the biosynthetic pathways for 2,3-diaminobutyric acid and hydroxymethylserine.
    CHEMISTRY. 2024 Mar 8:e202400271. doi: 10.1002/chem.202400271
  • Zheng, Y; Morita, N; Takagi, H; Shiozaki-Sato, Y; Ishikawa, J; Shin-ya, K;Takahashi, S.
    Alanyl-tRNA Synthetase-like Enzyme-Catalyzed Aminoacylation in Nucleoside Sulfamate Ascamycin Biosynthesis.
    ACS CATALYSIS. 2024 FEB 20. doi: 10.1021/acscatal.3c05667
  • Kudo, K; Nishimura, T; Izumikawa, M; Kozone, I; Hashimoto, J; Fujie, M; Suenaga, H; Ikeda, H; Satoh, N; Shin-Ya, K.
    Capability of a large bacterial artificial chromosome clone harboring multiple biosynthetic gene clusters for the production of diverse compounds.
    J ANTIBIOT (Tokyo). 2024 Mar 4. doi: 10.1038/s41429-024-00711-9
  • Miyashita, S; Ogura, T; Matsuura, S; Fukuda, E.
    Particle Size Measurement and Detection of Bound Proteins of Non-Porous/Mesoporous Silica Microspheres by Single-Particle Inductively Coupled Plasma Mass Spectrometry.
    MOLECULES. 2024 Feb 6. 29(5):1086. doi: 10.3390/molecules29051086
  • Phuyathip, W; Putthisen, S; Panawan O, Ma-In P; Teeravirote, K; Sintusen, P; Udomkitkosol, S; Detarya, M; Luang. S; Mahalapbutr, P; Sato, T; Kuno, A; Chuangchaiya, S; Silsirivanit, A.
    Role of Wisteria floribunda agglutinin binding glycans in carcinogenesis and metastasis of cholangiocarcinoma.
    HISTOCHEM CELL BIOL. 2024 Feb 23. doi: 10.1007/s00418-024-02270-4
  • Qayyum, MZ; Imashimizu, M; Leanca, M; Vishwakarma, RK; Riaz-Bradley, A; Yuzenkova, Y; Murakami, KS.
    Structure and function of the Si3 insertion integrated into the trigger loop/helix of cyanobacterial RNA polymerase.
    PROC NATL ACAD SCI U S A. 2024 Feb 20;121(8):e2311480121. doi: 10.1073/pnas.2311480121
  • Nagashima, I; Shimizu, H.
    Preparation of Mucin Glycopeptides by Organic Synthesis.
    METHODS MOL BIOL. 2024;2763:187-199. doi: 10.1007/978-1-0716-3670-1_16
  • Matsuda, A; Boottanun, P; Koizumi, S; Nagai, M; Kuno, A.
    Differential Glycoform Analysis of MUC1 Derived from Biological Specimens Using an Antibody-Overlay Lectin Microarray.
    METHODS MOL BIOL. 2024;2763:223-236. doi: 10.1007/978-1-0716-3670-1_19
  • Higo, J; Bekker, GJ; Kamiya, N; Fukuda, I; Fukunishi, Y;.
    Binding free-energy landscapes of small molecule binder and non-binder to FMN riboswitch: All-atom molecular dynamics.
    BIOPHYS PHYSICOBIOL. 2023 Dec 13;20(4):e200047. doi: 10.2142/biophysico.bppb-v20.0047
  • Sun, L; Morikawa, K; Sogo, Y; Sugiura, Y.
    MHY1485 potentiates immunogenic cell death induction and anti-cancer immunity following irradiation.
    J RADIAT RES. 2024 Feb 8:rrad107. doi: 10.1093/jrr/rrad107
  • Dong, W; Kameyama, A.
    Succinylation-Alcian Blue Staining of Mucins on Polyvinylidene Difluoride Membrane.
    METHODS MOL BIOL. 2024;2763:111-117. doi: 10.1007/978-1-0716-3670-1_9
  • Kameyama, A.
    Eliminative Oximation of O-Glycans from Mucins.
    METHODS MOL BIOL. 2024;2763:151-158. doi: 10.1007/978-1-0716-3670-1_13
  • Kameyama, A.
    Supported Molecular Matrix Electrophoresis.
    METHODS MOL BIOL. 2024;2763:79-97. doi: 10.1007/978-1-0716-3670-1_7
  • Sugiura, T; Kameyama, A.
    Preparation of Soluble Mucin Solutions from the Salivary Glands.
    METHODS MOL BIOL. 2024;2763:45-50. doi: 10.1007/978-1-0716-3670-1_3
  • Hasegawa, T; Nakagawara, A; Takagi, T; Shimoaka, T; Shioya, N; Sonoyama, M.
    Phonon modes controlled by primary chemical structure of partially fluorinated dimyristoylphosphatidylcholine (DMPC) revealed by multiple-angle incidence resolution spectrometry (MAIRS).
    J CHEM PHYS. 2024 Feb 14;160(6):064704. doi: 10.1063/5.0190441
  • Niibori-Nambu, A; Yamasaki, Y; Kobayashi, D; Angata, K; Kuno, A; Panawan, O; Silsilivanit, A; Narimatsu, H; Araki, N.
    Chondroitin sulfate modification of CSPG4 regulates the maintenance and differentiation of glioma initiating cells via integrin-associated signaling.
    J BIOL CHEM. 2024 Feb 1:105706. doi: 10.1016/j.jbc.2024.105706
  • Bekker, GJ; Fukunishi, Y; Higo, J; Kamiya, N.
    Binding Mechanism of Riboswitch to Natural Ligand Elucidated by McMD-Based Dynamic Docking Simulations.
    ACS OMEGA. 2024 Jan 10;9(3):3412-3422. doi: 10.1021/acsomega.3c06826 eCollection
  • Sato, T; Oishi, K.
    Time-restricted feeding has a limited effect on hepatic lipid accumulation, inflammation and fibrosis in a choline-deficient high-fat diet-induced murine NASH model.
    PLOS ONE. 2024 Jan 29;19(1):e0296950. doi: 10.1371/journal.pone.0296950
  • Kumar, V; Sari, AN; Gupta, D; Ishida, Y; Terao, K; Kaul, SC; Vrati, S; Sundar, D; Wadhwa, R.
    Anti-COVID-19 Potential of Withaferin-A and Caffeic Acid Phenethyl Ester.
    CURR TOP MED CHEM. 2024 Jan 24. doi: 10.2174/0115680266280720231221100004
  • Chen, LM; Keisham, S; Tateno, H; van, Ede J; Pronk, M; van, Loosdrecht MCM; Lin, Y.
    Alterations of Glycan Composition in Aerobic Granular Sludge during the Adaptation to Seawater Conditions.
    ACS ES T WATER. 2023 Dec 27;4(1):279-286. doi: 10.1021/acsestwater.3c00625
  • Kishimoto, T; Nishimura, K; Morishita, K; Fukuda, A; Miyamae, Y; Kumagai, Y; Sumaru, K; Nakanishi, M; Hisatake, K; Sano, M.
    An engineered ligand-responsive Csy4 endoribonuclease controls transgene expression from Sendai virus vectors.
    J BIOL ENG. 2024 Jan 16;18(1):9. doi: 10.1186/s13036-024-00404-9
  • Hashimoto, T; Suenaga, H; Amagai, K; Hashimoto, J; Kozone, I; Takahashi, S; Shin-Ya, K.
    In Vitro Module Editing Of NRPS Enables Production Of Highly Potent Gq-Signaling Inhibitor FR900359 Derived From Unculturable Plant Symbiont.
    ANGEW CHEM INT ED ENGL. 2024 Jan 18:e202317805. doi: 10.1002/anie.202317805
  • Germany, EM; Thewasano, N; Imai, K; Maruno, Y; Bamert, RS; Stubenrauch, CJ; Dunstan, RA; Ding, Y; Nakajima, Y; Lai, X; Webb, CT; Hidaka, K; Tan, KS; Shen, H; Lithgow, T; Shiota, T.
    Dual recognition of multiple signals in bacterial outer membrane proteins enhances assembly and maintains membrane integrity.
    ELIFE. 2024 Jan 16;12:RP90274. doi: 10.7554/eLife.90274
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    Nucleos(t)ide analogs for hepatitis B virus infection differentially regulate the growth factor signaling in hepatocytes.
    HEPATOL COMMUN. 2024 Jan 5;8(1):e0351. doi: 10.1097/HC9.0000000000000351
  • Zhang, Y; Yang, W; Kumagai, YLoza, M; Zhang, W; Park, SJ; Nakai, K.
    Multi-omics computational analysis unveils the involvement of AP-1 and CTCF in hysteresis of chromatin states during macrophage polarization.
    FRONT IMMUNOL. 2023 Dec 20;14:1304778. doi: 10.3389/fimmu.2023.1304778
  • Keisham, S; Saito, S; Kowashi, S; Tateno, H.
    Droplet-Based Glycan and RNA Sequencing for Profiling the Distinct Cellular Glyco-States in Single Cells.
    SMALL METHODS. 2024 Jan 2:e2301338. doi: 10.1002/smtd.202301338
  • Song, X; Nihashi, Y; amamoto, M; Setoyama, D; Kunisaki, Y; Kida, YS.
    Exploring the Role of Desmoplastic Physical Stroma in Pancreatic Cancer Progression Using a Three-Dimensional Collagen Matrix Model.
    BIOENGINEERING (Basel). 2023 Dec 18;10(12):1437. doi: 10.3390/bioengineering10121437
  • Kumar, V; Meidinna, HN; Kaul, SC; Gupta, D; Ishida, Y; Terao, K; Vrati, S; Sundar, D; Wadhwa, R.
    Molecular insights to the anti-COVID-19 potential of α-, β- and γ-cyclodextrins.
    J BIOMOL STRUCT DYN. 2023 Dec 20:1-11. doi: 10.1080/07391102.2023.2294385
  • Fukuda, I; Moritsugu, K; Higo, J; Fukunishi, Y.
    A cutoff-based method with charge-distribution-data driven pair potentials for efficiently estimating electrostatic interactions in molecular systems.
    J CHEM PHYS. 2023 Dec 21;159(23):234116. doi: 10.1063/5.0172270
  • Watanabe, Y; Iwasaki, Y; Sasaki, K; Motono, C; Imai, K; Suzuki, K.
    Atg15 is a vacuolar phospholipase that disintegrates organelle membranes.
    CELL REP. 2023 Dec 15:113567. doi: 10.1016/j.celrep.2023.113567
  • Miyazaki, M; Arisaka, C; Nakagawara, A; Sasaki, N; Takahashi, H; Takagi, T; Amii, H; Sonoyama, M.
    Thermodynamic study on hydrated bilayers of ether-linked phosphatidylcholines with terminal perfluorobutyl group.
    BIOCHIM BIOPHYS ACTA BIOMEMBR. 2023 Dec 13:184261. doi: 10.1016/j.bbamem.2023.184261
  • Sato, T; Ochiishi, T; Higo-Yamamoto, S; Oishi, K.
    Circadian and sleep phenotypes in a mouse model of Alzheimers disease characterized by intracellular accumulation of amyloid β oligomers.
    EXP ANIM. 2023 Dec 14. doi: 10.1538/expanim.23-0104
  • Zhang, HY; Zhang, ZY; Kaul, SC; Wadhawa, R.
    Antistress activity of some phytochemicals: screening, identification, validation, and potential applications.
    ANNALS OF NUTRITION AND METABOLISM. 2023;79 (suppl 1) 1087-1087; AUG. doi: 10.1159/000530786
  • Yonezawa, A; Mizushima, K; Hirai, Y; Tateno, H; Muto, A; Igarashi, K; Takag, T; Naito, Y; Higashimura, Y.
    Involvement of transcription repressor Bach1 in function of intestinal goblet cells.
    ANNALS OF NUTRITION AND METABOLISM. 2023;79 (suppl 1) 1170-1170; AUG. doi: 10.1159/000530786
  • Akagi, Y; Takayama, Y; Nihashi, Y; Yamashita, A; Yoshida, R; Miyamoto, Y; Kida, YS.
    Functional engineering of human iPSC-derived parasympathetic neurons enhances responsiveness to gastrointestinal hormones.
    FEBS OPEN BIO. 2023 Nov 27. doi: 10.1002/2211-5463.13741
  • Maeda, F; Adachi, S; Natsume, T.
    Non-destructive and efficient method for obtaining miRNA information in cells by artificial extracellular vesicles.
    SCI REP. 2023 Dec 14;13(1):22231. doi: 10.1038/s41598-023-48995-5
  • Adler, A; Fritsch, M; Fromell, K; Leneweit, G; Ekdahl, KN; Nilsson, B; Teramura, Y.
    Regulation of the innate immune system by fragmented heparin-conjugated lipids on lipid bilayered membranes in vitro.
    J MATER CHEM B. 2023 Nov 13. doi: 10.1039/d3tb01721d
  • Viswan, A; Yoshikawa, C; Yamagishi, A; Furuhata, Y; Kato, Y; Yamazaki, T; Nakamura, C.
    Efficient genome editing by controlled release of Cas9 ribonucleoprotein in plant cytosol using polymer-modified microneedle array.
    BIOCHEM BIOPHYS RES COMMUN. 2023 Oct 29;686:149179. doi: 10.1016/j.bbrc.2023.149179
  • Suzuki, S; Saito, S; Narushima, Y; Kodani, S; Kagaya, N; Suenaga, H; Shin-Ya, K; Arai, MA.
    Notch activator cyclopiazonic acid induces apoptosis in HL-60 cells through calcineurin activation.
    J ANTIBIOT (Tokyo). 2023 Nov 8. doi: 10.1038/s41429-023-00673-4
  • Takakuwa, H; Yamazaki, T; Souquere, S; Adachi, S; Yoshino, H; Fujiwara, N; Yamamoto, T; Natsume, T; Nakagawa, S; Pierron, G; Hirose, T.
    Shell protein composition specified by the lncRNA NEAT1 domains dictates the formation of paraspeckles as distinct membraneless organelles.
    NAT CELL BIOL. 2023 Nov 6. doi: 10.1038/s41556-023-01254-1
  • Ishii, N; Noguchi, K; Ikemoto, MJ; Yohda, M; Odahara, T.
    Optimizing Exosome Preparation Based on Size and Morphology: Insights From Electron Microscopy.
    MICROSC MICROANAL. 2023 Oct 13:ozad103. doi: 10.1093/micmic/ozad103
  • Ishii, N; Odahara, T.
    Investigation of the Efficacy of Lanthanoid Heavy Metal Acetates as Electron Staining Reagents for Biomembrane Vesicles.
    MICROSC MICROANAL. 2023 Oct 13:ozad107. doi: 10.1093/micmic/ozad107
  • Takeda, N; Tsuchiya, A; Mito, M; Natsui, K; Natusi, Y; Koseki, Y; Tomiyoshi, K; Yamazaki, F; Yoshida, Y; Abe, H; Sano, M; Kido, T; Yoshioka, Y; Kikuta, J; Itoh, T; Nishimura, K; Ishii, M; Ochiya, T; Miyajima, A; Terai, S.
    Analysis of distribution, collection, and confirmation of capacity dependency of small extracellular vesicles toward a therapy for liver cirrhosis.
    INFLAMM REGEN. 2023 Oct 9;43(1):48. doi: 10.1186/s41232-023-00299-x
  • Ishioka, M; Nihashi, Y; Sunagawa, Y; Umezawa, K; Shimosato, T; Kagami, H; Morimoto, T; Takaya, T.
    Myogenetic Oligodeoxynucleotide Induces Myocardial Differentiation of Murine Pluripotent Stem Cells.
    INT J MOL SCI. 2023 Sep 21;24(18):14380. doi: 10.3390/ijms241814380
  • Miyazawa, K; Penedo, M; Furusho, H; Ichikawa, T; Alam, MS; Miyata, K; Nakamura, C; Fukuma, T.
    Nanoendoscopy-AFM for Visualizing Intracellular Nanostructures of Living Cells.
    MICROSC MICROANAL. 2023 Jul 22;29(Supplement_1):782. doi: 10.1093/micmic/ozad067.387
  • Shimazaki, H; Nakamura, K; Ono, A; Segawa, O; Sawakami, K; Koizuka, M; Hirayama, M; Hori, K; Tajima, H; Kuno, A.
    Auto-Lectin Dotcoding by Two Octopuses: Rapid Analysis of Fluorescence-Labeled Glycoproteins by an 8-channel Fully-Automatic Bead Array Scanner with a Rolling-Circle Detector.
    ANAL CHEM. 2023 Aug 3. doi: 10.1021/acs.analchem.3c01395
  • Takubo, K; Htun, PW; Ueda, T; Sera, Y; Iwasaki, M; Koizumi, M; Shiroshita, K; Kobayashi, H; Haraguchi, M; Watanuki, S; Honda, ZI; Yamasaki, N; Nakamura-Ishizu, A; Arai, F; Motoyama, N; Hatta, T; Natsume, T; Suda, T; Honda, H.
    MBTD1 preserves adult hematopoietic stem cell pool size and function.
    PROC NATL ACAD SCI U S A. 2023 Aug 8;120(32):e2206860120. doi: 10.1073/pnas.2206860120
  • Odaka, H.
    Target-Specific O-linked N-acetylglucosamine Modification with a Dual-Specificity Aptamer Reveals Functions of O-GlcNAcylation in beta-catenin.
    TRENDS IN GLYCOSCIENCE AND GLYCOTECHNOLOGY. May 25, 2023; Volume 35(2023) Issue 205. doi: 10.4052/tigg.2309.6E
  • Ichikawa, T; Alam, MS; Penedo, M; Matsumoto, K; Fujita, S; Miyazawa, K; Furusho, H; Miyata, K; Nakamura, C; Fukuma, T.
    Protocol for live imaging of intracellular nanoscale structures using atomic force microscopy with nanoneedle probes.
    STAR PROTOC. 2023 Jul 22;4(3):102468. doi: 10.1016/j.xpro.2023.102468
  • Kumar, V; Dhanjal, JK; Sari, AN; Khurana, M; Kaul, SC; Wadhwa, R; Sundar, D.
    Effect of Withaferin-A, Withanone, and Caffeic Acid Phenethyl Ester on DNA Methyltransferases: Potential in Epigenetic Cancer Therapy.
    CURR TOP MED CHEM. 2023 Jul 26. doi: 10.2174/1568026623666230726105017
  • Boottanun, P; Nagai-Okatani, C; Nagai, M; Ungkulpasvich, U; Yamane, S; Yamada, M; Kuno, A.
    An improved evanescent fluorescence scanner suitable for high-resolution glycome mapping of formalin-fixed paraffin-embedded tissue sections.
    ANALYTICAL AND BIOANALYTICAL CHEMISTRY. 2023 JUL 3. doi: 10.1007/s00216-023-04824-2
  • Miyashita, K; Yagi, T; Kagaya, N; Takechi, A; Nakata, C; Kanda, R; Nuriya, H; Tanegashima, K; Hoyano, S; Seki, F; Yoshida, C; Hachiro, Y; Higashi, T; Kitada, N; Toya, T; Kobayashi, T; Najima, Y; Goyama, S; Maki, SA; Kitamura, T; Doki, N; Shin-Ya, K; Hara, T.
    Identification of compounds that preferentially suppress the growth of T-cell acute lymphoblastic leukemia-derived cells.
    CANCER SCI. 2023 Jul 31. doi: 10.1111/cas.15918
  • Nihashi, Y, Song, X; Yamamoto, M; Setoyama, D; Kida, YS.
    Decoding Metabolic Symbiosis between Pancreatic Cancer Cells and Cancer-Associated Fibroblasts Using Cultured Tumor Microenvironment.
    INT J MOL SCI. 2023 Jul 3;24(13):11015. doi: 10.3390/ijms241311015
  • Tanaka, S; Sakaue, H, Koiwai, T; Okuda, N; Okuyama, K; Horioka, Y; Hiramatsu, Y; Kawashima, M; Ishiguro, N; Sato, T.
    Near-infrared radiation causes sebaceous gland enlargement along with an ROS-dependent augmentation of epidermal growth factor receptor expression in hamsters.
    EXPERIMENTAL DERMATOLOGY. 2023 JUL 4. doi: 10.1111/exd.14878
  • Fuseya, S; Izumi, H; Hamano, A; Murakami, Y; Suzuki, R; Koiwai, R; Hayashi, T; Kuno, A, Takahashi, S; Kudo, T.
    Reduction in disialyl-T antigen levels in mice deficient for both St6galnac3 and St6galnac4 results in blood filling of lymph nodes.
    SCI REP. 2023 Jun 29;13(1):10582. doi: 10.1038/s41598-023-37363-y
  • Taniguchi, M; Okumura, R; Matsuzaki, T; Nakatani, A; Sakaki, K; Okamoto, S; Ishibashi, A; Tani, H; Horikiri, M; Kobayashi, N; Yoshikawa, HY; Motooka, D; Okuzaki, D; Nakamura, S; Kida, T; Kameyama, A, Takeda, K.
    Sialylation shapes mucus architecture inhibiting bacterial invasion in the colon.
    MUCOSAL IMMUNOL. 2023 Jun 27:S1933-0219(23)00049-1. doi: 10.1016/j.mucimm.2023.06.004
  • Roberts, MD; McCarthy, JJ; Hornberger, TA; Phillips, SM; Mackey, AL; Nader, GA; Boppart, MD; Kavazis, AN; Reidy, PT; Ogasawara, R, Libardi, CA; Ugrinowitsch, C; Booth, FW; Esser, KA.
    Mechanisms of mechanical overload-induced skeletal muscle hypertrophy: current understanding and future directions.
    PHYSIOL REV. 2023 Jun 29. doi: 10.1152/physrev.00039.2022
  • Fujihara, H; Hirose, J; Suenaga, H.
    Evolution of genetic architecture and gene regulation in biphenyl/PCB-degrading bacteria.
    FRONTIERS IN MICROBIOLOGY. 2023 Jun 7;14:1168246. doi: 10.3389/fmicb.2023.1168246
  • Tsuyukubo, A; Morishita, K; Kanamori, T; Sumaru, K.
    Construction of a spheroid array culture system on a suspended permeable hydrogel membrane scaffold for improving the expression of a liver-specific drug-metabolizing enzyme of HepG2 cells.
    BIOMATER SCI. 2023 Jun 22. doi: 10.1039/d3bm00071k
  • Ohkawa, M; Konno, M.
    RNA Modification Related Diseases and Sensing Methods.
    APPLIED SCIENCES-BASEL. 2023 13(11) 6376. doi: 10.3390/app13116376
  • Zhuang, HT; Fujikura, Y, Ohkura, N; Higo-Yamamoto, S; Mishima, T; Oishi, K.
    A ketogenic diet containing medium-chain triglycerides reduces REM sleep duration without significant influence on mouse circadian phenotypes.
    FOOD RESEARCH INTERNATIONAL. 2023 Jul;169:112852. doi: 10.1016/j.foodres.2023.112852
  • Kalra, RS; Chaudhary, A; Omar, A; Li, X; Khurana, M; Kaul, SC, Wadhwa, R.
    Stress-induced changes in CARF expression serve as a quantitative predictive measure of cell proliferation fate.
    EXP CELL RES. 2023 Jun 3:113669. doi: 10.1016/j.yexcr.2023.113669
  • Watanabe, T, Tateno, H.
    Lectin Blotting of Cell Lysates.
    CURR PROTOC. 2023 May;3(5):e790. doi: 10.1002/cpz1.790
  • Takayama, Y, Akagi, Y, Kida, YS.
    Deciphering the Molecular Mechanisms of Autonomic Nervous System Neuron Induction through Integrative Bioinformatics Analysis.
    INT J MOL SCI. 2023 May 21;24(10):9053. doi: 10.3390/ijms24109053
  • Abe, T, Sato, T, Murotomi, K.
    Sudachitin and Nobiletin Stimulate Lipolysis via Activation of the cAMP/PKA/HSL Pathway in 3T3-L1 Adipocytes.
    FOODS. 2023 May 10;12(10):1947. doi: 10.3390/foods12101947
  • Kuroda, Y; Oda, T; Shimomura, O; Louphrasitthiphol, P; Mathis, BJ; Tateno, H, Hatano, K.
    Novel positron emission tomography imaging targeting cell surface glycans for pancreatic cancer: (18) F-labeled rBC2LCN lectin.
    CANCER SCI. 2023 May 19. doi: 10.1111/cas.15846
  • Sugiyama, JI; Tokunaga, Y; Hishida, M; Tanaka, M; Takeuchi, K; Satoh, D; Imashimizu, M.
    Nonthermal acceleration of protein hydration by sub-terahertz irradiation.
    NAT COMMUN. 2023 May 22;14(1):2825. doi: 10.1038/s41467-023-38462-0
  • Odaka, H; Tateno, H.
    Single-Cell Glycan and RNA Sequencing (scGR-seq).
    CURR PROTOC. 2023 May;3(5):e777. doi: 10.1002/cpz1.777
  • Arima, K; Akiyama, S; Shin-Ya, K; Matsuda, K; Wakimoto, T.
    Carrier Protein Mediated Formation of the Dihydropyridazinone Ring in Actinopyridazinone Biosynthesis.
    ANGEW CHEM INT ED ENGL. 2023 May 17:e202305155. doi: 10.1002/anie.202305155
  • Huifu, H; Shefrin, S; Yang, S; Zhang, Z; Kaul, SC; Sundar, D; Wadhwa, R.
    Cucurbitacin-B inhibits cancer cell migration by targeting mortalin and HDM2: computational and in vitro experimental evidence.
    J BIOMOL STRUCT DYN. 2023 May 2:1-10. doi: 10.1080/07391102.2023.2206914
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    Phototunable Cell Killing by Photochromic Diarylethene of Thiazoyl and Thienyl Derivatives.
    JOURNAL OF MEDICINAL CHEMISTRY. 2023, 66 (8) 5937-5949. doi: 10.1021/acs.jmedchem.3c00164
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    A multiomics atlas of brown adipose tissue development over time.
    ENDOCRINOLOGY. 2023 Apr 21:bqad064. doi: 10.1210/endocr/bqad064
  • Zhang, H; Wang, J; Prakash, J; Zhang, Z; Kaul, SC; Wadhwa, R.
    Three-way Cell-based Screening of Antistress Compounds: Identification, Validation, and Relevance to Old-age Related Pathologies.
    J GERONTOL A BIOL SCI MED SCI. 2023 Apr 15:glad103. doi: 10.1093/gerona/glad103
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    Expression and localisation of MUC1 modified with sialylated core-2 O-glycans in mucoepidermoid carcinoma.
    SCI REP. 2023 Apr 8;13(1):5752. doi: 10.1038/s41598-023-32597-2
  • Ikemoto, MJ; Aihara, Y; Ishii, N; Shigemori, H.
    3,4-Dihydroxybenzalacetone Inhibits the Propagation of Hydrogen Peroxide-Induced Oxidative Effect via Secretory Components from SH-SY5Y Cells.
    BIOL PHARM BULL. 2023;46(4):599-607. doi: 10.1248/bpb.b22-00727

2022年

  • Sugiura, S; Yamahira, S; Tamura, M; Shin, K; Shibuta, M; Satoh, T; Matsuzawa, Y; Fujii, G; Yanagawa, F; Mutoh, M; Yanagisawa, M; Kato, R; Matsui, H.
    Automated cell isolation from photodegradable hydrogel based on fluorescence image analysis.
    BIOTECHNOL BIOENG. 2023 Mar 15. doi: 10.1002/bit.28375
  • Murata, Y; Jitsukawa, T; Iida, M; Furuta, T; Haramoto, Y; Shigeri, Y; Fujisaki, S.
    Liquid chromatography-mass spectrometry analyses of polyprenyl phosphates in Escherichia coli cells in which genes for isoprenoid synthesis are amplified.
    J BIOSCI BIOENG. 2023 Mar 1:S1389-1723(23)00047-6. doi: 10.1016/j.jbiosc.2023.02.003
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