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最先端バイオ技術探求グループ [ 所在地:臨海副都心センター ] 

最先端バイオ技術探求グループがこれまでに発表した、論文の発行年月、タイトル、著者、掲載誌等の一覧です。

原著論文

2018


A minimal threshold of FANCJ helicase activity is required for its response to replication stress or double-strand break repair
Bharti SK, Sommers JA, Awate S, Bellani MA, Khan I, Bradley L, King GA, Seol Y, Vidhyasagar V, Wu Y, Abe T, Kobayashi K, Shin-ya K, Kitao H, Wold MS, Branzei D, Neuman KC, Brosh RM Jr.
Nucleic Acids Res. 2018 May 21. [Epub ahead of print]
Unprecedented Cyclization Catalyzed by a Cytochrome P450 in Benzastatin Biosynthesis
Tsutsumi H, Katsuyama Y, Izumikawa M, Takagi M, Fujie M, Satoh N, Shin-ya K, Ohnishi Y
J Am Chem Soc. 2018 May 21. [Epub ahead of print]
Pseudomonas furukawaii sp. nov., a polychlorinated biphenyl-degrading bacterium isolated from biphenyl-contaminated soil in Japan
Kimura N, Watanabe T, Suenaga H, Fujihara H, Futagami T, Goto M, Hanada S, Hirose J
Int J Syst Evol Microbiol 2018 May;68(5):1429-35
JBIR-150, a novel 20-membered polyene macrolactam from marine-derived Streptomyces sp. OPMA00071
Kawahara T, Fujiwara T, Kagaya N, Shin-ya K
J Antibiot (Tokyo). 2018 Mar;71(3):390-2
Neothioviridamide, a Polythioamide Compound Produced by Heterologous Expression of a Streptomyces sp. Cryptic RiPP Biosynthetic Gene Cluster
Kawahara T, Izumikawa M, Kozone I, Hashimoto J, Kagaya N, Koiwai H, Komatsu M, Fujie M, Sato N, Ikeda H, Shin-ya K
J Nat Prod. 2018 Feb 23;81(2):264-9
Reconstitution of a Type II Polyketide Synthase that Catalyzes Polyene Formation
Du D, Katsuyama Y, Shin-Ya K, Ohnishi Y
Angew Chem Int Ed Engl. 2018 Feb 12;57(7):1954-7
Functional analysis of methyltransferases participating in streptothricin-related antibiotic biosynthesis
Niikura H, Maruyama C, Ogasawara Y, Shin-ya K, Dairi T, Hamano Y
J Biosci Bioeng. 2018 Feb;125(2):148-54

2017


A small-molecule compound inhibits a collagen-specific molecular chaperone and could represent a potential remedy for fibrosis
Ito S, Ogawa K, Takeuchi K, Takagi M, Yoshida M, Hirokawa T, Hirayama S, Shin-ya K, Shimada I, Doi T, Goshima N, Natsume T, Nagata K
J Biol Chem. 2017 Dec 8;292(49):20076-85
Insights into the genomic plasticity of Pseudomonas putida KF715, a strain with unique biphenyl-utilizing activity and genome instability properties
Suenaga H, Fujihara H, Kimura N, Hirose J, Watanabe T, Futagami T, Goto M, Shimodaira J, Furukawa K
Environ Microbiol Rep. 2017 Oct;9(5):589-98
N-Phenylacetylation and Nonribosomal Peptide Synthetases with Substrate Promiscuity for Biosynthesis of Heptapeptide Variants, JBIR-78 and JBIR-95
Takeda K, Kemmoku K, Satoh Y, Ogasawara Y, Shin-Ya K, Dairi T
ACS Chem Biol. 2017 Jul 21;12(7):1813-9
Targeting glioma stem cells in vivo by a G-quadruplex-stabilizing synthetic macrocyclic hexaoxazole
Nakamura T, Okabe S, Yoshida H, Iida K, Ma Y, Sasaki S, Yamori T, Shin-Ya K, Nakano I, Nagasawa K, Seimiya H
Sci Rep. 2017 Jun 15;7(1):3605
Identification of a gene cluster for telomestatin biosynthesis and heterologous expression using a specific promoter in a clean host
Amagai K, Ikeda H, Hashimoto J, Kozone I, Izumikawa M, Kudo F, Eguchi T, Nakamura T, Osada H, Takahashi S, Shin-Ya K
Sci Rep. 2017 Jun 13;7(1):3382
Biosynthetic Origin of the Hydroxamic Acid Moiety of Trichostatin A: Identification of Unprecedented Enzymatic Machinery Involved in Hydroxylamine Transfer
Kudo K, Ozaki T, Shin-Ya K, Nishiyama M, Kuzuyama T
J Am Chem Soc. 2017 May 24;139(20):6799-802
Biochemical and structural characterization of oxygen-sensitive 2-thiouridine synthesis catalyzed by an iron-sulfur protein TtuA
Chen M, Asai SI, Narai S, Nambu S, Omura N, Sakaguchi Y, Suzuki T, Ikeda-Saito M, Watanabe K, Yao M, Shigi N, Tanaka Y
Proc Natl Acad Sci U S A. 2017 May 9;114(19):4954-9
Correlation between luminescence intensity and cytotoxicity in cell-based cytotoxicity assay using luciferase
Wakuri S, Yamakage K, Kazuki Y, Kazuki K, Oshimura M, Aburatani S, Yasunaga M, Nakajima Y
Anal Biochem. 2017 Apr 1;522:18-29
Complete genome sequence and expression profile of the commercial lytic enzyme producer Lysobacter enzymogenes M497-1
Takami H, Toyoda A, Uchiyama I, Itoh T, Takaki Y, Arai W, Nishi S, Kawai M, Shin-Ya K, Ikeda H
DNA Res. 2017 Apr; 24(2):169-77
Complete Genome Sequence of the Polychlorinated Biphenyl-Degrading Bacterium Pseudomonas putida KF715 (NBRC 110667) Isolated from Biphenyl-Contaminated Soil
Suenaga H, Yamazoe A, Hosoyama A, Kimura N, Hirose J, Watanabe T, Fujihara H, Futagami T, Goto M, Furukawa K
Genome Announc. 2017 Feb 16;5(7):e01624-16
Spatial variations in the molecular diversity of dissolved organic matter in water moving through a boreal forest in eastern Finland
Ide J, Ohashi M, Takahashi K, Sugiyama Y, Piirainen S, Kortelainen P, Fujitake N, Yamase K, Ohte N, Moritani M, Hara M, Finér L
Sci Rep. 2017 Feb 10;7:42102
Characterization of Giant Modular PKSs Provides Insight into Genetic Mechanism for Structural Diversification of Aminopolyol Polyketides
Zhang L, Hashimoto T, Qin B, Hashimoto J, Kozone I, Kawahara T, Okada M, Awakawa T, Ito T, Asakawa Y, Ueki M, Takahashi S, Osada H, Wakimoto T, Ikeda H, Shin-Ya K, Abe I
Angew Chem Int Ed Engl. 2017 Feb 6;56(7):1740-5
Novel arginine-containing peptides MBJ-0173 and MBJ-0174 from Mortierella alpina f28740
Kawahara T, Itoh M, Izumikawa M, Sakata N, Tsuchida T, Shin-Ya K
J Antibiot. 2017 Feb;70(2):226-9
Spatially resolved metabolic distribution for unraveling the physiological change and responses in tomato fruit using matrix-assisted laser desorption/ionization-mass spectrometry imaging (MALDI-MSI)
Nakamura J, Morikawa-Ichinose T, Fujimura Y, Hayakawa E, Takahashi K, Ishii T, Miura D, Wariishi H
Anal Bioanal Chem. 2017 Feb;409(6):1697-706
Elucidation of the sequential transcriptional activity in Escherichia coli using time-series RNA-seq data
Wong PS, Tashiro K, Kuhara S, Aburatani S
Bioinformation. 2017 Jan 31;13(1):25-30
Genome Mining of Amino Group Carrier Protein-Mediated Machinery: Discovery and Biosynthetic Characterization of a Natural Product with Unique Hydrazone Unit
Matsuda K, Hasebe F, Shiwa Y, Kanesaki Y, Tomita T, Yoshikawa H, Shin-Ya K, Kuzuyama T, Nishiyama M
ACS Chem Biol. 2017 Jan 20;12(1):124-31

2016


Identification of a rhodanese-like protein involved in thiouridine biosynthesis in Thermus thermophilus tRNA
Shigi N, Asai SI, Watanabe K
FEBS Lett. 2016 Dec;590(24):4628-37
Synthesis of Spiromamakone A Benzo Analogues via Double Oxa-Michael Addition of 1,8-Dihydroxynaphthalene
Tsukamoto H, Hanada S, Kumasaka K, Kagaya N, Izumikawa M, Shin-Ya K, Doi T
Org Lett. 2016 Oct 7;18(19):4848-51
Crystallographic study of the 2-thioribothymidine-synthetic complex TtuA-TtuB from Thermus thermophilus
Chen M, Narai S, Omura N, Shigi N, Chimnaronk S, Tanaka Y, Yao M
Acta Crystallogr F Struct Biol Commun. 2016 Oct 1;72(Pt 10):777-81
Screening, identification, and characterization of α-xylosidase from a soil metagenome
Matsuzawa T, Kimura N, Suenaga H, Yaoi K
J Biosci Bioeng. 2016 Oct;122(4):393-9
JBIR-76 and JBIR-77, modified naphthoquinones from Streptomyces sp. RI-77
Motohashi K, Izumikawa M, Kagaya N, Takagi M, Shin-Ya K
J Antibiot. 2016 Sep;69(9):707-8
Production of a Novel Amide-Containing Polyene by Activating a Cryptic Biosynthetic Gene Cluster in Streptomyces sp. MSC090213JE08
Du D, Katsuyama Y, Onaka H, Fujie M, Satoh N, Shin-Ya K, Ohnishi Y
Chembiochem. 2016 Aug 3;17(15):1464-71
Rapid and simple determination of minimum biofilm eradication concentration by a colorimetric microbial viability assay based on reduction of a water-tetrazolium salt and combinated effect of antibiotics against microbial biofilm
Tsukatani T, Kawaguchi T, Suenaga H, Shiga M, Ikegami T
J Microbiol Biotech Food Sci. 2016;6(1):677-80
Sulfur Modifications in tRNA: Function and Implications for Human Disease
Shigi N
Modified Nucleic Acids in Biology and Medicine. 2016 Jul 30:55-71
Prediction of developmental chemical toxicity based on gene networks of human embryonic stem cells
Yamane J, Aburatani S, Imanishi S, Akanuma H, Nagano R, Kato T, Sone H, Ohsako S, Fujibuchi W
Nucleic Acids Res. 2016 Jul 8;44(12):5515-28
Unveiling the Biosynthetic Pathway of the Ribosomally Synthesized and Post-translationally Modified Peptide Ustiloxin B in Filamentous Fungi
Ye Y, Minami A, Igarashi Y, Izumikawa M, Umemura M, Nagano N, Machida M, Kawahara T, Shin-Ya K, Gomi K, Oikawa H
Angew Chem Int Ed Engl. 2016 Jul 4;55(28):8072-5
Folate-/FAD-dependent tRNA methyltransferase from Thermus thermophilus regulates other modifications in tRNA at low temperatures
Yamagami R, Tomikawa C, Shigi N, Kazayama A, Asai S, Takuma H, Hirata A, Fourmy D, Asahara H, Watanabe K, Yoshizawa S, Hori H
Genes Cells. 2016 Jul;21(7):740-54
Involvement of the Baeyer-Villiger Monooxygenase IfnQ in the Biosynthesis of Isofuranonaphthoquinone Scaffold of JBIR-76 and -77
Katsuyama Y, Sone K, Satou R, Izumikawa M, Takagi M, Fujie M, Satoh N, Shin-Ya K, Ohnishi Y
Chembiochem. 2016 Jun 2;17(11):1021-8
tRNA-Dependent Aminoacylation of an Amino Sugar Intermediate in the Biosynthesis of a Streptothricin-Related Antibiotic
Maruyama C, Niikura H, Izumikawa M, Hashimoto J, Shin-Ya K, Komatsu M, Ikeda H, Kuroda M, Sekizuka T, Ishikawa J, Hamano Y
Appl Environ Microbiol. 2016 May 31;82(12):3640-8
Identification of the Fluvirucin B2 (Sch 38518) Biosynthetic Gene Cluster from Actinomadura fulva subsp. indica ATCC 53714: substrate Specificity of the β-Amino Acid Selective Adenylating Enzyme FlvN
Miyanaga A, Hayakawa Y, Numakura M, Hashimoto J, Teruya K, Hirano T, Shin-Ya K, Kudo F, Eguchi T
Biosci Biotechnol Biochem. 2016 May;80(5):935-41
Methylbenzene-Containing Polyketides from a Streptomyces that Spontaneously Acquired Rifampicin Resistance: Structural Elucidation and Biosynthesis
Thong WL, Shin-ya K, Nishiyama M, Kuzuyama T
J Nat Prod. 2016 Apr 22;79(4):857-64
Cell-specific localization of alkaloids in Catharanthus roseus stem tissue measured with Imaging MS and Single-cell MS
Yamamoto K, Takahashi K, Mizuno H, Anegawa A, Ishizaki K, Fukaki H, Ohnishi M, Yamazaki M, Masujima T, Mimura T
Proc Natl Acad Sci U S A. 2016 Apr 5;113(14):3891-6
Synthetic PAMPS gel activates BMP/Smad signaling pathway in ATDC5 cells, which plays a significant role in the gel-induced chondrogenic differentiation
Goto K, Kimura T, Kitamura N, Semba S, Ohmiya Y, Aburatani S, Matsukura S, Tsuda M, Kurokawa T, Ping Gong J, Tanaka S, Yasuda K
J Biomed Mater Res A. 2016 Mar;104(3):734-46
Linear and Nonlinear Regression for Combinatorial Optimization Problem of Multiple Transgenesis
Tominaga D, Mori K, Aburatani S
IPSJ Transactions on Bioinformatics, 2016 Mar;9:7-11
G-quadruplex ligand-induced DNA damage response coupled with telomere dysfunction and replication stress in glioma stem cells
Hasegawa D, Okabe S, Okamoto K, Nakano I, Shin-ya K, Seimiya H
Biochem Biophys Res Commun. 2016 Feb 26;471(1):75-81
Biosynthesis of mercapturic acid derivative of the labdane-type diterpene, cyslabdan that potentiates imipenem activity against methicillin-resistant Staphylococcusaureus: cyslabdan is generated by mycothiol-mediated xenobiotic detoxification
Ikeda H, Shin-Ya K, Nagamitsu T, Tomoda H
J Ind Microbiol Biotechnol. 2016 Mar;43(2-3):325-42
Curromycin A as a GRP78 downregulator and a new cyclic dipeptide from Streptomyces sp
Hayakawa Y, Akimoto M, Ishikawa A, Izawa M, Shin-ya K
J Antibiot. 2016 Mar;69(3):187-8
Dysregulated YAP1/TAZ and TGF-β signaling mediate hepatocarcinogenesis in Mob1a/1b-deficient mice
Nishio M, Sugimachi K, Goto H, Wang J, Morikawa T, Miyachi Y, Takano Y, Hikasa H, Itoh T, Suzuki SO, Kurihara H, Aishima S, Leask A, Sasaki T, Nakano T, Nishina H, Nishikawa Y, Sekido Y, Nakao K, Shin-Ya K, Mimori K, Suzuki A
Proc Natl Acad Sci U S A. 2016 Jan 5;113(1):E71-80
Class of cyclic ribosomal peptide synthetic genes in filamentous fungi
Nagano N, Umemura M, Izumikawa M, Kawano J, Ishii T, Kikuchi M, Tomii K, Kumagai T, Yoshimi A, Machida M, Abe K, Shin-ya K, Asai K
Fungal Genet Biol. 2016 Jan;86:58-70
MBJ-0110, a novel cyclopeptide isolated from the fungus Penicillium sp. f25267
Kawahara T, Itoh M, Kozone I, Izumikawa M, Sakata N, Tsuchida T, Shin-Ya K
J Antibiot. 2016 Jan;69(1):66-8
Genomic Analysis of Fungal Species No.11243 Mutant Strains Provides Insights into the Relationship between Mutations and High Productivity
Matsui M, Yokoyama T, Kumagai T, Nemoto K, Terai G, Machida M, Shibata T, Aburatani S
Br Biotechnol J, 2016;10(2):1-13

2015


Foxo3a Inhibitors of Microbial Origin, JBIR-141 and JBIR-142
Kawahara T, Kagaya N, Masuda Y, Doi T, Izumikawa M, Ohta K, Hirao A, Shin-ya K
Org Lett. 2015 Nov 6;17(21):5476-9
Synthesis of marine oxylipin topsentolide A1 and its stereoisomers, and determination of the absolute configuration of the natural product
Ishigami K, Kobayashi M, Takagi M, Shin-ya K, Watanabe H
Tetrahedron. 2015 Nov 4;71(44):8436-43
Identification and Characterization of the Streptazone E Biosynthetic Gene Cluster in Streptomyces sp. MSC090213JE08
Ohno S, Katsuyama Y, Tajima Y, Izumikawa M, Takagi M, Fujie M, Satoh N, Shin-Ya K, Ohnishi Y
Chembiochem. 2015 Nov 2;16(16):2385-91
Characterization of the biosynthetic gene cluster for maklamicin, a spirotetronate-class antibiotic of the endophytic Micromonospora sp. NBRC 110955
Daduang R, Kitani S, Hashimoto J, Thamchaipenet A, Igarashi Y, Shin-ya K, Ikeda H, Nihira T
Microbiol Res. 2015 Nov;180:30-9
Draft Genome Sequence of the Polychlorinated Biphenyl-Degrading Bacterium Pseudomonas stutzeri KF716 (NBRC 110668)
Hirose J, Yamazoe A, Hosoyama A, Kimura N, Suenaga H, Watanabe T, Fujihara H, Futagami T, Goto M, Furukawa K
Genome Announc. 2015 Oct 22;3(5): e01215-15
Draft Genome Sequence of the Polychlorinated Biphenyl-Degrading Bacterium Comamonas testosteroni KF712 (NBRC 110673)
Hirose J, Yamazoe A, Hosoyama A, Kimura N, Suenaga H, Watanabe T, Fujihara H, Futagami T, Goto M, Furukawa K
Genome Announc. 2015 Oct 15;3(5):e01214-15
Pyrrolidine-containing peptides, JBIR-126, -148, and -149, from Streptomyces sp. NBRC 111228
Izumikawa M, Kawahara T, Kagaya N, Yamamura H, Hayakawa M, Takagi M, Yoshida M, Doi T,Shin-ya K
Tetrahedron. 2015 Sep 23;56(39):5333-6
Application of KL Divergence for Estimation of Each Metabolic Pathway Genes
Maruyama S, Matsuyama Y, Aburatani S
World Academy of Science, Engineering and Technology, 2015 Sep;9(3):272-6
Comparative Analysis of Soil Enzyme Activities between Laurel-Leaved and Cryptomeria japonica Forests
Itsuki A, Aburatani S
World Academy of Science, Engineering and Technology, 2015 Sep;9(2):295
Development of an Algorithm for Reconstructing a Comprehensive Pathway Model: Application to Saccharomyces cerevisiae
Takeda I, Machida M, Aburatani S
J Biomed Sci Eng. 2015 Aug 17;8(8):500-10
Novel thioviridamide derivative-JBIR-140: heterologous expression of the gene cluster for thioviridamide biosynthesis
Izumikawa M, Kozone I, Hashimoto J, Kagaya N, Takagi M, Koiwai H, Komatsu M, Fujie M, Satoh N, Ikeda H, Shin-ya K
J Antibiot. 2015 Aug;68(8):533-6
Development and Application of a High-Resolution Imaging Mass Spectrometer for the Study of Plant Tissues
Takahashi K, Kozuka T, Anegawa A, Nagatani A, Mimura T
Plant Cell Physiol. 2015 Jul 1;56(7):1329-38
Asymmetric Total Synthesis of ent-Pyripyropene A
Fuse S, Ikebe A, Oosumi K, Karasawa T, Matsumura K, Izumikawa M, Johmoto K, Uekusa H, Shin-ya K, Doi T, Takahashi T
Chemistry. 2015 Jun 22;21(26):9454-60
Novel terpenes generated by heterologous expression of bacterial terpene synthase genes in an engineered Streptomyces host
Yamada Y, Arima S, Nagamitsu T, Johmoto K, Uekusa H, Eguchi T, Shin-ya K, Cane DE, Ikeda H
Antibiot. 2015 Jun;68(6):385-94
Draft Genome Sequence of Pseudomonas aeruginosa KF702 (NBRC 110665), a Polychlorinated Biphenyl-Degrading Bacterium Isolated from Biphenyl-Contaminated Soil
Fujihara H, Yamazoe A, Hosoyama A, Suenaga H, Kimura N, Hirose J, Watanabe T, Futagami T, Goto M, Furukawa K
Genome Announc. 2015 May 21;3(3):e00517-15
Draft Genome Sequence of Pseudomonas abietaniphila KF701 (NBRC110664), a Polychlorinated Biphenyl-Degrading Bacterium Isolated from Biphenyl-Contaminated Soil
Fujihara H, Yamazoe A, Hosoyama A, Suenaga H, Kimura N, Hirose J, Watanabe T, Futagami T, Goto M, Furukawa K
Genome Announc. 2015 May 14;3(3):e00473-15
Saccharothriolides A-C, novel phenyl-substituted 10-membered macrolides isolated from a rare actinomycete Saccharothrix sp.
Lu S, Nishimura S, Hirai G, Ito M, Kawahara T, Izumikawa M, Sodeoka M, Shin-Ya K, Tsuchida T, Kakeya H
Chem Commun (Camb). 2015 May 11;51(38):8074-7
Draft Genome Sequence of Pseudomonas toyotomiensis KF710, a Polychlorinated Biphenyl-Degrading Bacterium Isolated from Biphenyl-Contaminated Soil
Watanabe T, Yamazoe A, Hosoyama A, Fujihara H, Suenaga H, Hirose J, Futagami T, Goto M, Kimura N, Furukawa K
Genome Announc. 2015 Apr 2;3(2):e00223-15
Draft Genome Sequence of Cupriavidus pauculus Strain KF709, a Biphenyl-Utilizing Bacterium Isolated from Biphenyl-Contaminated Soil
Watanabe T, Yamazoe A, Hosoyama A, Fujihara H, Suenaga H, Hirose J, Futagami T, Goto M, Kimura N, Furukawa K
Genome Announc. 2015 Mar 26;3(2):e00222-15
Stereochemical Assignment of the Protein-Protein Interaction Inhibitor JBIR-22 by Total Synthesis
Healy AR, Izumikawa M, Slawin AM, Shin-Ya K, Westwood NJ
Angew Chem Int Ed Engl. 2015 Mar 23;54(13):4046-50
Draft Genome Sequence of the Polychlorinated Biphenyl-Degrading Bacterium Cupriavidus basilensis KF708 (NBRC 110671) Isolated from Biphenyl-Contaminated Soil
Suenaga H, Yamazoe A, Hosoyama A, Kimura N, Hirose J, Watanabe T, Fujihara H, Futagami T, Goto M, Furukawa K
Genome Announc. 2015 Mar 19;3(2):e00143-15
Draft Genome Sequence of the Polychlorinated Biphenyl-Degrading Bacterium Pseudomonas putida KF703 (NBRC 110666) Isolated from Biphenyl-Contaminated Soil
Suenaga H, Yamazoe A, Hosoyama A, Kimura N, Hirose J, Watanabe T, Fujihara H, Futagami T, Goto M, Furukawa K
Genome Announc. 2015 Mar 19;3(2):e00142-15
Draft Genome Sequence of Pseudomonas abietaniphila KF717 (NBRC 110669), Isolated from Biphenyl-Contaminated Soil in Japan
Kimura N, Yamazoe A, Hosoyama A, Hirose J, Watanabe T, Suenaga H, Fujihara H, Futagami T, Goto M, Furukawa K
Genome Announc. 2015 Mar 19;3(2):e00059-15
Substrate tRNA Recognition Mechanism of Eubacterial tRNA (m1A58) Methyltransferase (TrmI)
Takuma H, Ushio N, Minoji M, Kazayama A, Shigi N, Hirata A, Tomikawa C, Ochi A, Hori H
J Biol Chem. 2015 Feb 27;290(9):5912-25
Total Synthesis and Structure Elucidation of JBIR-39: A Linear Hexapeptide Possessing Piperazic Acid and γ-Hydroxypiperazic Acid Residues
Yoshida M, Sekioka N, Izumikawa M, Kozone I, Takagi M, Shin-Ya K, Doi T
Chemistry. 2015 Feb 9;21(7):3031-41
Biosynthesis of Versipelostatin: Identification of an Enzyme-Catalyzed [4+2]-Cycloaddition Required for Macrocyclization of Spirotetronate-Containing Polyketides
Hashimoto T, Hashimoto J, Teruya K, Hirano T, Shin-ya K, Ikeda H, Liu HW, Nishiyama M, Kuzuyama T
J Am Chem Soc. 2015 Jan 21;137(2):572-5
Terpene synthases are widely distributed in bacteria
Yamada Y, Kuzuyama T, Komatsu M, Shin-Ya K, Omura S, Cane DE, Ikeda H
Proc Natl Acad Sci U S A. 2015 Jan 20;112(3):857-62
Extradiol Dioxygenases Retrieved from the Metagenome
K Miyazaki, H Suenaga
Encyclopedia of Metagenomics, 2015 Jan 4:167-71
Total Synthesis and Structure Determination of JBIR-108—A 2-Hydroxy-2-(1-hydroxyethyl)-2,3-dihydro-3(2H)-furanone Isolated from Streptomyces gramineus IR087Pi-4
Fujiwara K, Tsukamoto H, Izumikawa M, Hosoya T, Kagaya N, Takagi M, Yamamura H, Hayakawa M, Shin-Ya K, Doi T
J Org Chem. 2015 Jan 2;80(1):114-32
Oil Accumulation by the Oleaginous Diatom Fistulifera solaris as Revealed by the Genome and Transcriptome
Tanaka T, Maeda Y, Veluchamy A, Tanaka M, Abida H, Maréchal E, Bowler C, Muto M, Sunaga Y, Tanaka M, Yoshino T, Taniguchi T, Fukuda Y, Nemoto M, Matsumoto M, Wong PS, Aburatani S, Fujibuchi W
Plant Cell. 2015 Jan;27(1):162-76
MBJ-0086 and MBJ-0087, new bicyclic depsipeptides, from Sphaerisporangium sp. 33226
Kawahara T, Itoh M, Izumikawa M, Hashimoto J, Sakata N, Tsuchida T, Shin-ya K
J Antibiot. 2015 Jan;68(1):67-70
New 2-(1'H-indole-3'-carbonyl)-thiazoles derived from the thermophilic bacterium Thermosporothrix hazakensis SK20-1T
Park JS, Yabe S, Shin-ya K, Nishiyama M, Kuzuyama T
J Antibiot. 2015 Jan;68(1):60-2
New acylated anthocyanins from purple yam and their antioxidant activity
Moriya C, Hosoya T, Agawa S, Sugiyama Y, Kozone I, Shin-Ya K, Terahara N, Kumazawa S
Biosci Biotechnol Biochem. 2015;79(9):1484-92
Structural Equation Modeling for Systems Biology
Aburatani S, Toh H
Encyclopedia of Information Science and Technology, 2015;3rd Ed(44):458-67
Classification method for heterogeneity in monoclonal cell population
Aburatani S, Tashiro K, Kuhara S
J Phys: Conf Ser, 2015;633(1),012077
Inference of Transcriptional Network for Pluripotency in Mouse Embryonic Stem Cells
Aburatani S
J Phys: Conf Ser, 2015;574(1),012138
Comparative Analysis of Enzyme Activities Concerned in Decomposition of Toluene
Itsuki A, Aburatani S
World Academy of Science, Engineering and Technology, 2015;86:126-9

2014


A highly oxygenated ergostane—MBJ-0005—from Anthostomella eucalyptorum f25427
Izumikawa M, Itoh M, Kawahara T, Sakata N, Tsuchida T, Mizukami T, Shin-Ya K
J Antibiot. 2014 Dec;67(12):843-5
Actinopyrone D, a new downregulator of the molecular chaperone GRP78 from Streptomyces sp.
Hayakawa Y, Saito J, Izawa M, Shin-ya K
J Antibiot. 2014 Dec;67(12):831-4
Diversity of extradiol dioxygenases in aromatic-degrading microbial community explored using both culture-dependent and culture-independent approaches
Suenaga H, Mizuta S, Miyazaki K, Yaoi K
FEMS Microbiol Ecol. 2014 Nov;90(2):367-79
Tracking Difference in Gene Expression in a Time-Course Experiment Using Gene Set Enrichment Analysis
Wong PS, Tanaka M, Sunaga Y, Tanaka M, Taniguchi T, Yoshino T, Tanaka T, Fujibuchi W, Aburatani S
PLoS One. 2014 Sep 30;9(9):e107629
Total Synthesis and Stereochemistry Revision of Mannopeptimycin Aglycone
Fuse S, Koinuma H, Kimbara A, Izumikawa M, Mifune Y, He H, Shin-ya K, Takahashi T, Doi T
J Am Chem Soc. 2014 Aug 27;136(34):12011-7
Biosynthesis of the 4-Methyloxazoline-Containing Nonribosomal Peptides, JBIR-34 and -35, in Streptomyces sp. Sp080513GE-23
Muliandi A, Katsuyama Y, Sone K, Izumikawa M, Moriya T, Hashimoto J, Kozone I, Takagi M, Shin-ya K, Ohnishi Y
Chem Biol. 2014 Aug 14;21(8):923-34
Statistical stage transition detection method for small sample gene expression time series data
Tominaga D
Math Biosci. 2014 Aug;254:58-63
Novel aziridine-containing peptides MBJ-0034 and MBJ-0035 from Streptosporangium sp. 32552
Kawahara T, Itoh M, Izumikawa M, Sakata N, Tsuchida T, Shin-Ya K
J Antibiot. 2014 Aug;67(8):577-80
Soil Respiration Rate of Laurel-Leaved and Cryptomeria japonica Forests
Itsuki A, Aburatani S
World Academy of Science, Engineering and Technology, 2014 Aug;8(6):460-4
A rapid microplate method for the proliferation assay of fungi and the antifungal susceptibility testing using the colorimetric microbial viability assay
Tsukatani T, Suenaga H, Shiga M, Matsumoto K
Lett Appl Microbiol. 2014 Aug;59(2):184-92
Characterization of the biosynthetic gene cluster for the ribosomally synthesized cyclic peptide ustiloxin B in Aspergillus flavus
Umemura M, Nagano N, Koike H, Kawano J, Ishii T, Miyamura Y, Kikuchi M, Tamano K, Yu J, Shin-ya K, Machida M
Fungal Genet Biol. 2014 Jul;68:23-30
Genome-Based Discovery of a Novel Membrane-Bound 1,6-Dihydroxyphenazine Prenyltransferase from a Marine Actinomycete
Zeyhle P, Bauer JS, Kalinowski J, Shin-ya K, Gross H, Heide L
PLoS One. 2014 Jun 3;9(6):e99122
Establishment of the absolute configuration of the 34-membered polyol macrolide compound JBIR-129
Kawahara T, Ohira S, Izumikawa M, Tanaka H, Shin-Ya K
J Antibiot. 2014 May;67(5):419-20
Identification and Biosynthesis of New Acyloins from the Thermophilic Bacterium Thermosporothrix hazakensis SK20-1T
Park JS, Kagaya N, Hashimoto J, Izumikawa M, Yabe S, Shin-Ya K, Nishiyama M, Kuzuyama T
Chembiochem. 2014 Mar 3;15(4):527-32
New hydroxamate metabolite, MBJ-0003, from Micromonospora sp. 29867
Kawahara T, Itoh M, Izumikawa M, Kozone I, Sakata N, Tsuchida T, Shin-ya K
J Antibiot. 2014 Mar;67(3):261-3
Isolation, structural elucidation and biosynthesis of 3-hydroxy-6-dimethylallylindolin-2-one, a novel prenylated indole derivative from Actinoplanes missouriensis
Satou R, Izumikawa M, Katsuyama Y, Matsui M, Takagi M, Shin-ya K, Ohnishi Y
J Antibiot. 2014 Mar;67(3):231-6
Diversity of bacteria and polyketide synthase associated with marine sponge Haliclona sp.
Khan ST, Musarrat J, Alkhedhairy AA, Shin-ya K
Ann Microbiol. 2014 Mar;64(1):199-207
Power of isotopic fine structure for unambiguous determination of metabolite elemental compositions: In silico evaluation and metabolomic application
Nagao T, Yukihira D, Fujimura Y, Saito K, Takahashi K, Miura D, Wariishi H
Anal Chim Acta. 2014 Feb 27;813:70-6
Genome mining of the Streptomycesavermitilis genome and development of genome-minimized hosts for heterologous expression of biosynthetic gene clusters
Ikeda H, Kazuo SY, Omura S
J Ind Microbiol Biotechnol. 2014 Feb;41(2):233-50
Total synthesis and characterization of thielocin B1 as a protein-protein interaction inhibitor of PAC3 homodimer
Doi T, Yoshida M, Ohsawa K, Shin-ya K, Takagi M, Uekusa Y, Yamaguchi T, Kato K, Hirokawa T, Natsume T
Chem. Sci. 2014;5:1860-8
NMR Spectroscopic Characterization of Inclusion Complexes of Theaflavin Digallate and Cyclodextrins
Nishizawa M, Hosoya T, Hirokawa T, Shin-ya K, Kumazawa S
Food Sci Technol Res. 2014;20(3):663-70
Network inference of AP pattern formation system in D.melanogaster by structural equation modeling
Aburatani S , Toh H
J. Phys.: Conf. Ser. 2014;490(1):012145

2013


MIDDAS-M: Motif-Independent De Novo Detection of Secondary Metabolite Gene Clusters through the Integration of Genome Sequencing and Transcriptome Data
Umemura M, Koike H, Nagano N, Ishii T, Kawano J, Yamane N, Kozone I, Horimoto K, Shin-ya K, Asai K, Yu J, Bennett JW, Machida M
PLoS One. 2013 Dec 31;8(12):e84028
Spectomycin B1 as a Novel SUMOylation Inhibitor That Directly Binds to SUMO E2
Hirohama M, Kumar A, Fukuda I, Matsuoka S, Igarashi Y, Saitoh H, Takagi M, Shin-ya K, Honda K, Kondoh Y, Saito T, Nakao Y, Osada H, Zhang KY, Yoshida M, Ito A
ACS Chem Biol. 2013 Dec 20;8(12):2635-42
New chaetoglobosin derivatives, MBJ-0038, MBJ-0039 and MBJ-0040, isolated from the fungus Chaetomium sp. f24230
Kawahara T, Itoh M, Izumikawa M, Sakata N, Tsuchida T, Shin-ya K
J Antibiot. 2013 Dec;66(12):727-30
Estimation of Physical Transcriptional Control in Yeast Cell Cycle by Structure Equation Modeling
Aburatani S, Toh H
Protein Purification and Analysis I: Methods and Applications, 2013 Oct 11;Chapter 5
G-Quadruplexes as Potential Therapeutic Targets for Embryonal Tumors
Shalaby T, Fiaschetti G, Nagasawa K, Shin-ya K, Baumgartner M, Grotzer M
Molecules. 2013 Oct 10;18(10):12500-37
MFSPSSMpred: identifying short disorder-to-order binding regions in disordered proteins based on contextual local evolutionary conservation
Fang C, Noguchi T, Tominaga D, Yamana H
BMC Bioinformatics. 2013 Oct 4;14:300
Specialization among Iron-Sulfur Cluster Helicases to Resolve G-quadruplex DNA Structures That Threaten Genomic Stability
Bharti SK, Sommers JA, George F, Kuper J, Hamon F, Shin-ya K, Teulade-Fichou MP, Kisker C, Brosh RM Jr
J Biol Chem. 2013 Sep 27;288(39):28217-29
Cytotoxic sesquiterpenoids MBJ-0009 and MBJ-0010 from a saprobic fungus Nectria sp. f26111
Kawahara T, Itoh M, Izumikawa M, Sakata N, Tsuchida T, Shin-ya K
J Antibiot. 2013 Sep;66(9):567-9
Correction of the structure of cuevaene A and its identity with MBJ-0020 from Streptomyces sp. 30503
Izumikawa M, Itoh M, Kawahara T, Sakata N, Tsuchida T, Shin-ya K
J Antibiot. 2013 Sep;66(9):563-5
Synthesis of Heptaoxazole Macrocyclic Analogues of Telomestatin and Evaluation of Their Telomerase Inhibitory Activities
Shibata K, Yoshida M, Takahashi T, Takagi M, Shin-ya K, Doi T
Bull Chem Soc Jpn. 2013;86(12):1453-65
Design and synthesis of 2-phenyl-1,4-dioxa-spiro[4.5]deca-6,9-dien-8-ones as potential anticancer agents starting from cytotoxic spiromamakone A
Fuse S, Inaba K, Takagi M, Tanaka M, Hirokawa T, Johmoto K, Uekusa H, Shin-Ya K, Takahashi T, Doi T
Eur J Med Chem. 2013 Aug;66:180-4
Engineered Streptomyces avermitilis Host for Heterologous Expression of Biosynthetic Gene Cluster for Secondary Metabolites
Komatsu M, Komatsu K, Koiwai H, Yamada Y, Kozone I, Izumikawa M, Hashimoto J, Takagi M, Omura S, Shin-ya K, Cane DE, Ikeda H
ACS Synth Biol. 2013 Jul 19;2(7):384-96
Crystallographic and mutational studies on the tRNA thiouridine synthetase TtuA
Nakagawa H, Kuratani M, Goto-Ito S, Ito T, Katsura K, Terada T, Shirouzu M, Sekine S, Shigi N, Yokoyama S
Proteins. 2013 Jul;81(7):1232-44
Inference of Gene Regulatory Networks to Detect Toxicity-Specific Effects in Human Embryonic Stem Cells
Aburatani S, Fujibuchi W, Yamane J, Imanishi S, Nagano R, Sone, HOhsako S
Int J on Adv in Life Sci. 2013 Jun 30;5(1-2):103-14
Mammalian DNA2 helicase/nuclease cleaves G-quadruplex DNA and is required for telomere integrity
Lin W, Sampathi S, Dai H, Liu C, Zhou M, Hu J, Huang Q, Campbell J, Shin-Ya K, Zheng L, Chai W, Shen B
EMBO J. 2013 May 15;32(10):1425-39
Atrx deficiency induces telomere dysfunction, endocrine defects, and reduced life span
Watson LA, Solomon LA, Li JR, Jiang Y, Edwards M, Shin-ya K, Beier F, Bérubé NG
J Clin Invest. 2013 May;123(5):2049-63
Three eremophilane derivatives, MBJ-0011, MBJ-0012 and MBJ-0013, from an endophytic fungus Apiognomonia sp. f24023
Kawahara T, Itoh M, Izumikawa M, Sakata N, Tsuchida T, Shin-ya K
J Antibiot. 2013 May;66(5):299-302
The impact of collapsing data on microarray analysis and DILI prediction
Pessiot JF, Wong PS, Maruyama T, Morioka R, Aburatani A, Tanaka M, Fujibuchi W
Systems Biomedicine. 2013 Apr 12;1(2):137-43
FANCJ couples replication past natural fork barriers with maintenance of chromatin structure
Schwab RA, Nieminuszczy J, Shin-ya K, Niedzwiedz W
J Cell Biol. 2013 Apr 1;201(1):33-48
Gene expression profiling of hepatitis B- and hepatitis C-related hepatocellular carcinoma using graphical Gaussian modeling
Ueda T, Honda M, Horimoto K, Aburatani S, Saito S, Yamashita T, Sakai Y, Nakamura M, Takatori H, Sunagozaka H, Kaneko S
Genomics. 2013 Apr;101(4):238-48
New pyridone alkaloids JBIR-130, JBIR-131 and JBIR-132 from Isaria sp. NBRC 104353
Hosoya T, Takagi M, Shin-ya K
J Antibiot. 2013 Apr;66(4):235-8
Estimate hidden dynamic profiles of siRNA effect on apoptosis
Ueda T, Tominaga D, Araki N, Yoshikawa T
BMC Bioinformatics. 2013 Mar 15;14:97
Two-way AIC: detection of differentially expressed genes from large scale microarray meta-dataset
Tsuyuzaki K, Tominaga D, Kwon Y, Miyazaki S
BMC Genomics. 2013;14 Suppl 2:S9
JBIR-107, a New Metabolite from the Marine-Sponge-Derived Actinomycete, Streptomyces tateyamensis NBRC 105047
Izumikawa M, Kawahara T, Hwang JH, Takagi M, Shin-ya K
Biosci Biotechnol Biochem. 2013;77(3):663-5

2012


Numbers and Biomass of Bacteria and Fungi Obtained by the Direct Microscopic Count Method
Itsuki A, Aburatani S
World Academy of Science, Engineering and Technology, 2012 Dec;6(12):1051-5
Inference of Specific Gene Regulation by Environmental Chemicals in Human Embryonic Stem Cells
Aburatani S, Fujibuchi W
J Mol Biol Res. 2012 Dec;2(1):54-64
Solophenols B-D and Solomonin: New Prenylated Polyphenols Isolated from Propolis Collected from The Solomon Islands and Their Antibacterial Activity
Inui S, Hosoya T, Shimamura Y, Masuda S, Ogawa T, Kobayashi H, Shirafuji K, Moli RT, Kozone I, Shin-ya K, Kumazawa S
J Agric Food Chem. 2012 Nov 28;60(47):11765-70
Pleiotropic Control of Secondary Metabolism and Morphological Development by KsbC, a Butyrolactone Autoregulator Receptor Homologue in Kitasatospora setae
Aroonsri A, Kitani S, Hashimoto J, Kosone I, Izumikawa M, Komatsu M, Fujita N, Takahashi Y, Shin-ya K, Ikeda H, Nihira T
Appl Environ Microbiol. 2012 Nov;78(22):8015-24
Compound C Prevents the Unfolded Protein Response during Glucose Deprivation through a Mechanism Independent of AMPK and BMP Signaling
Saito S, Furuno A, Sakurai J, Park HR, Shin-ya K, Tomida A
PLoS One. 2012;7(9):e45845
A new furaquinocin derivative, JBIR-136, from Streptomyces sp. 4963H2
Kawahara T, Nagai A, Takagi M, Shin-ya K
J Antibiot. 2012 Nov;65(11):579-81
JBIR-129 and -139, Cytotoxic 34-Membered Polyol Macrolides of Microbial Origin
Kawahara T, Hwang JH, Izumikawa M, Hashimoto J, Takagi M, Shin-ya K
J Nat Prod. 2012 Oct 26;75(10):1814-8
JBIR-137 and JBIR-138, new secondary metabolites from Aspergillus sp. fA75
Kawahara T, Nagai A, Takagi M, Shin-ya K
J Antibiot. 2012 Oct;65(10):535-8
Relative Configuration of JBIR-129, a Cytotoxic 34-Membered Glycosidic Polyol Macrolide from Streptomyces sp. RK74
Kawahara T, Izumikawa M, Takagi M, Shin-ya K
Org Lett. 2012 Sep 7;14(17):4434-7
Involvement of Membrane GRP78 in Trophoblastic Cell Fusion
Fradet S, Pierredon S, Ribaux P, Epiney M, Shin Ya K, Irion O, Cohen M
PLoS One. 2012;7(8):e40596
Construction of a natural product library containing secondary metabolites produced by actinomycetes
Takagi M, Shin-Ya K
J Antibiot. 2012 Sep;65(9):443-7
A stand-alone adenylation domain forms amide bonds in streptothricin biosynthesis
Maruyama C, Toyoda J, Kato Y, Izumikawa M, Takagi M, Shin-ya K, Katano H, Utagawa T, Hamano Y
Nat Chem Biol. 2012 Sep;8(9):791-7
Comparison of the WST-8 colorimetric method and the CLSI broth microdilution method for susceptibility testing against drug-resistant bacteria
Tsukatani T, Suenaga H, Shiga M, Noguchi K, Ishiyama M, Ezoe T, Matsumoto K
J Microbiol Methods. 2012 Sep;90(3):160-6
Network Inference of pal-1 Lineage-Specific Regulation in the C. elegans Embryo by Structural Equation Modeling
Aburatani S
Bioinformation. 2012 July 21;8(14):652-7
JBIR-120: a new growth inhibitor of hormone-refractory prostate cancer cells
Kawahara T, Hosoya T, Tsukamoto M, Okabe S, Yamamura H, Hayakawa M, Seimiya H, Takagi M, Shin-Ya K
J Antibiot. 2012 Jul;65(7):373-5
Posttranslational Modification of Cellular Proteins by a Ubiquitin-like Protein in Bacteria
Shigi N
J Biol Chem. 2012 May 18;287(21):17568-77
Inhibition of histone H3K9 methyltransferases by gliotoxin and related epipolythiodioxopiperazines
Takahashi M, Takemoto Y, Shimazu T, Kawasaki H, Tachibana M, Shinkai Y, Takagi M, Shin-ya K, Igarashi Y, Ito A, Yoshida M
J Antibiot. 2012 May;65(5):263-5
Analysis of the biological activity of a novel 24-membered macrolide JBIR-19 in Saccharomyces cerevisiae by the morphological imaging program CalMorph
Ohnuki S, Kobayashi T, Ogawa H, Kozone I, Ueda JY, Takagi M, Shin-Ya K, Hirata D, Nogami S, Ohya Y
FEMS Yeast Res. 2012 May;12(3):293-304
Tyrosyl-DNA Phosphodiesterase 1 Inhibitor from an Anamorphic Fungus
Takagi M, Ueda JY, Hwang JH, Hashimoto J, Izumikawa M, Murakami H, Sekido Y, Shin-ya K
J Nat Prod. 2012 Apr 27;75(4):764-7
A Caged Ligand for a Telomeric G-Quadruplex
Nakamura T, Iida K, Tera M, Shin-ya K, Seimiya H, Nagasawa K
Chembiochem. 2012 Apr 16;13(6):774-7
Comprehensive predictions of target proteins based on protein-chemical interaction using virtual screening and experimental verifications
Kobayashi H, Harada H, Nakamura M, Futamura Y, Ito A, Yoshida M, Iemura SI, Shin-Ya K, Doi T, Takahashi T, Natsume T, Imoto M, Sakakibara Y
BMC Chem Biol. 2012 Apr 5;12:2
Human telomerase reverse transcriptase and glucose-regulated protein 78 increase the life span of articular chondrocytes and their repair potential
Sato M, Shin-ya K, Lee JI, Ishihara M, Nagai T, Kaneshiro N, Mitani G, Tahara H, Mochida J
BMC Musculoskelet Disord. 2012 Apr 2;13:51
Telomestatin Impairs Glioma Stem Cell Survival and Growth through the Disruption of Telomeric G-Quadruplex and Inhibition of the Proto-oncogene, c-Myb
Miyazaki T, Pan Y, Joshi K, Purohit D, Hu B, Demir H, Mazumder S, Okabe S, Yamori T, Viapiano M, Shin-ya K, Seimiya H, Nakano I
Clin Cancer Res. 2012 Mar 1;18(5):1268-80
Three new depsipeptides, JBIR-113, JBIR-114 and JBIR-115, isolated from a marine sponge-derived Penicillium sp. fS36
Kawahara T, Takagi M, Shin-Ya K
J Antibiot. 2012 Mar;65(3):147-150
Trichostatin Analogues JBIR-109, JBIR-110, and JBIR-111 from the Marine Sponge-Derived Streptomyces sp. RM72
Hosoya T, Hirokawa T, Takagi M, Shin-ya K
J Nat Prod. 2012 Feb 24;75(2):285-9
JBIR-78 and JBIR-95: Phenylacetylated Peptides Isolated from Kibdelosporangium sp. AK-AA56
Izumikawa M, Takagi M, Shin-Ya K
J Nat Prod. 2012 Feb 24;75(2):280-4
JBIR-94 and JBIR-125, Antioxidative Phenolic Compounds from Streptomyces sp. R56-07
Kawahara T, Izumikawa M, Otoguro M, Yamamura H, Hayakawa M, Takagi M, Shin-ya K
J Nat Prod. 2012 Jan 27;75(1):107-10
JBIR-124: a novel antioxidative agent from a marine sponge-derived fungus Penicillium citrinum SpI080624G1f01
Kawahara T, Takagi M, Shin-ya K
J Antibiot. 2012 Jan;65(1):45-7
A new cyclizidine analog-JBIR-102-from Saccharopolyspora sp. RL78 isolated from mangrove soil
Izumikawa M, Hosoya T, Takagi M, Shin-ya K
J Antibiot. 2012 Jan;65(1):41-3
Actinobacteria Associated with the Marine Sponges Cinachyra sp., Petrosia sp., and Ulosa sp. and Their Culturability
Khan ST, Takagi M, Shin-ya K
Microbes Environ. 2012;27(1):99-104
Design and Synthesis of G-Quadruplex Ligands Bearing Macrocyclic Hexaoxazoles with Four-Way Side Chains
Iida K, Majima S, Ohtake T, Tera M, Shin-ya K, Nagasawa K
Heterocycles. 2012;84(1):401-11

総説、その他


Targeted metagenomics unveils the molecular basis for adaptive evolution of enzymes to their environment
Suenaga H
Front Microbiol. 2015 Sep 22;6:1018
Biosynthesis and functions of sulfur modifications in tRNA
Shigi N
Front Genet. 2014 Apr 2;5(67):1-11
Inferring Genes Involved in Metabolic Pathways by Using Support Vector Machines
Maruyama S, Matsuyama Y, Aburatani S
Proceeding of ABBE2014, 2014:30-6
Post-transcriptional modification of tRNA and post-translational modification of proteins in thermophilic bacteria
好熱性真正細菌におけるtRNA 硫黄修飾塩基とユビキチン類似翻訳後修飾
鴫 直樹
バイオサイエンスとインダストリー. 2013;71(2):146-9
Application of Structural Equation Modeling for Inferring Toxicity-Dependent Regulation in Human Embryonic Stem Cells [PDF:338KB]
Aburatani S, Fujibuchi W
Proceeding of GLOBAL HEALTH 2012 Oct 21:27-32
Targeted metagenomics: a high-resolution metagenomics approach for specific gene clusters in complex microbial communities
Suenaga H
Environ Microbiol. 2012 Jan;14(1):13-22

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