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※ ゲノム制御情報研究グループは、人工知能研究センター オーミクス情報研究チーム へ異動となりました。(2016年4月1日付)
ゲノム制御情報研究グループ [ 所在地:臨海副都心センター ] 

ゲノム制御情報研究グループがこれまでに発表した、論文の発行年月、タイトル、著者、掲載誌等の一覧です。

原著論文

2015


Split-alignment of genomes finds orthologies more accurately
Frith MC, Kawaguchi R
Genome Biol. 2015 May 21;16:106
Effects of multivalency and hydrophobicity of polyamines on enzymehyperactivation of α-chymotrypsin
Kurinomaru T, Kameda T, Shiraki K
J Mol Catal B-Enzym. 2015 May;115:135-9
Oil Accumulation by the Oleaginous Diatom Fistulifera solaris as Revealed by the Genome and Transcriptome
Tanaka T, Maeda Y, Veluchamy A, Tanaka M, Abida H, Maréchal E, Bowler C, Muto M, Sunaga Y, Tanaka M, Yoshino T, Taniguchi T, Fukuda Y, Nemoto M, Matsumoto M, Wong P, Aburatani S, Fujibuchi W
Plant Cell. 2015 Jan;27(1):162-76

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2014


Tracking Difference in Gene Expression in a Time-Course Experiment Using Gene Set Enrichment Analysis
Wong P, Tanaka M, Sunaga Y, Tanaka M, Taniguchi T, Yoshino T, Tanaka T, Fujibuchi W, Aburatani S
PLoS One. 2014 Sep 30;9(9):e107629
Frameshift alignment: statistics and post-genomic applications
Sheetlin SL, Park Y, Frith MC, Spouge JL
Bioinformatics. 2014 Dec 15;30(24):3575-82
Methylome, transcriptome, and PPARγ cistrome analyses reveal two epigenetic transitions in fat cells
Takada H, Saito Y, Mituyama T, Wei Z, Yoshihara E, Jacinto S, Downes M, Evans RM, Kida YS
Epigenetics. 2014 Sep;9(9):1195-206
Statistical stage transition detection method for small sample gene expression time series data
Tominaga D
Math Biosci. 2014 Aug;254:58-63
Arginine Side Chains as a Dispersant for Individual Single-Wall Carbon Nanotubes
Hirano A, Tanaka T, Kataura H, Kameda T
Chemistry. 2014 Apr 22;20(17):4922-30
Improved search heuristics find 20 000 new alignments between human and mouse genomes
Frith MC, Noé L
Nucleic Acids Res. 2014 Apr;42(7):e59
Bisulfighter: accurate detection of methylated cytosines and differentially methylated regions
Saito Y, Tsuji J, Mituyama T
Nucleic Acids Res. 2014 Apr;42(6):e45
Close Identity between Alternatively Folded State N2 of Ubiquitin and the Conformation of the Protein Bound to the Ubiquitin-Activating Enzyme
Kitazawa S, Kameda T, Kumo A, Yagi-Utsumi M, Baxter NJ, Kato K, Williamson MP, Kitahara R
Biochemistry. 2014 Jan 28;53(3):447-9
A biochemical landscape of A-to-I RNA editing in the human brain transcriptome
Sakurai M, Ueda H, Yano T, Okada S, Terajima H, Mitsuyama T, Toyoda A, Fujiyama A, Kawabata H, Suzuki T
Genome Res. 2014 Mar;24(3):522-34

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2013


Estimate hidden dynamic profiles of siRNA effect on apoptosis
Ueda T, Tominaga D, Araki N, Yoshikawa T
BMC Bioinformatics. 2013 Mar 15;14:97
Gene expression profiling of hepatitis B- and hepatitis C-related hepatocellular carcinoma using graphical Gaussian modeling
Ueda T, Honda M, Horimoto K, Aburatani S, Saito S, Yamashita T, Sakai Y, Nakamura M, Takatori H, Sunagozaka H, Kaneko S
Genomics. 2013 Apr;101(4):238-48

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2012


Prediction of Conserved Precursors of miRNAs and Their Mature Forms by Integrating Position-Specific Structural Features
Terai G, Okida H, Asai K, Mituyama T
PLoS One. 2012 Sep 5;7(9):e44314
Network inference of pal-1 lineage-specific regulation in the C. elegans embryo by structural equation modeling
Aburatani S
Bioinformation. 2012 Jul 21;8(14):652-7

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